get3DTemplateImgs: Get 3D template images for registration
In NHPatterson/Reg3DIMS: Automated registration of sequential 2D IMS for 3D reconstruction in Cardinal
Description
Usage
Arguments
Value
View source: R/get3DTemplateImgs.R
Description
Generate a named list of template images based on Cardinal IMS or analysis data (m/z images, PCA, Spatial Shrunken Centroids clustering)
Usage
1
get3DTemplateImgs(ims, canvas_xy = c(700, 700), column = "PC1")
Arguments
ims
Cardinal data of class: MSImagingExperiment, PCA2, SpatialShrunkenCentroids2
canvas_xy
standardized canvas size for all images, must accomodate all IMS pixels
column
name of column to extract if character, or m/z value if numeric
Value
named list of images
NHPatterson/Reg3DIMS documentation built on Oct. 30, 2019, 10:04 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/get3DTemplateImgs.R
Description
Generate a named list of template images based on Cardinal IMS or analysis data (m/z images, PCA, Spatial Shrunken Centroids clustering)
Usage
1 | get3DTemplateImgs(ims, canvas_xy = c(700, 700), column = "PC1")
|
Arguments
ims |
Cardinal data of class: MSImagingExperiment, PCA2, SpatialShrunkenCentroids2 |
canvas_xy |
standardized canvas size for all images, must accomodate all IMS pixels |
column |
name of column to extract if character, or m/z value if numeric |
Value
named list of images
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.