get_species_data: Pull species data from cfdbs

In NOAA-EDAB/neusCatch: Multispecies length expansion of commercial catch

Pull species data from cfdbs

Description

Pulls data from cfdbs via [comlandr] Palmer method applied to assign missing attributes (NEGEAR, QTR, AREA) to landings records

Usage

get_species_data(
  channel,
  speciesRules = NULL,
  year = "all",
  outPath = here::here(),
  fileName = NULL
)

Arguments

channel	an Object inherited from DBIConnection-class. This object is used to communicate with the database engine. (see connect_to_database)
speciesRules	List. Containing species specific rules. Default = NULL (Fully automated). Note: Predefined speciesRules will be bundled with the package for select species
year	Numeric vector. Containing the years to search over. Default = "all"
outPath	Character string. Path to directory where data will be saved
fileName	character string. File name of data to be saved

Value

List. Data is also written to disk.

landins	Data frame containing landings data by YEAR, QTR, NEGEAR, MARKET_CODE
lengths	Data frame containing fish lengths by YEAR, QTR, NEGEAR, MARKET_CODE

NOAA-EDAB/neusCatch documentation built on Jan. 23, 2025, 3:29 a.m.