View source: R/get_species_object_mskeyrun.r
get_species_object_mskeyrun | R Documentation |
Lists set of rules required for catch at length aggregation
get_species_object_mskeyrun(species_itis = NULL)
species_itis |
Numeric. Itis code for species (Default = NA, Returns a NA object for user to define) |
A List
species_itis |
6 digit species ITIS code |
speciesName |
Species Name |
SVSPP |
Species survey SVSPP code |
temporalAggregation |
Level of temporal aggregation: "QTR","SEMESTER","YEAR" |
marketCodes |
Data frame: mapping Market codes to use with market codes to combine |
gearCodes |
Data frame: mapping gear codes to use with gear codes to combine |
statStockArea |
Character array of statistical areas (3 characters) |
howAggregate |
How to aggregate the landings data in absense of length samples: "borrow","combine" |
LengthWeightData |
Where length-weight data comes from: "survey","commercial","both" |
LengthWeightRelationships |
How to fit length-weight relationships. By: "semester","quarter" |
LengthWeightTimeBlocks |
Time block over which to use for length weight data: "all", c(years) |
AgeData |
Where Age data from from: "survey","commercial" |
AgeLengthKey |
Variables over which to calculate age length key: "semester","qtr","gear" |
startDate |
First year of assessment |
stock |
Defines the stock, if more than one stock for a species:"GB","GOM","North","South |
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