Files in NOAA-EDAB/neusCatch
Multispecies length expansion of commercial catch
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yml
.github/workflows/secretScan.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/aggregate_data_by_class.R
R/aggregate_gear.R
R/aggregate_gear_rules.R
R/aggregate_landings.R
R/aggregate_market_codes.R
R/aggregate_market_codes_rules.R
R/aggregate_to_qtr.R
R/aggregate_to_qtr2.R
R/aggregate_to_semester.R
R/aggregate_to_semester2.R
R/aggregate_to_year.R
R/aggregate_unclassifieds.R
R/calc_numbers_at_age.r
R/calc_numbers_at_length.r
R/checks_qa_qc.R
R/combine_age_data.R
R/compare_gear_lengths.R
R/compare_length_distributions.R
R/create_age_length_key.R
R/create_filter_expression.R
R/create_yr_semester_age_length_key.r
R/expand_landings_to_lengths.R
R/expand_species_rules.R
R/expand_to_num.R
R/expand_to_weight.R
R/expand_unclassified_landings.R
R/fit_length_weight.R
R/get_length_weight_age_data.r
R/get_multinomial_props.R
R/get_sample_data.R
R/get_species_data.r
R/get_species_object.r
R/get_species_object_mskeyrun.r
R/marketCodeLookupTable.R
R/missing_length_by_qtr.R
R/missing_length_by_qtr_combine.R
R/missing_length_by_qtr_neighbor.R
R/missing_length_by_semester.R
R/missing_length_by_semester_combine.R
R/missing_length_by_semester_neighbor.R
R/missing_length_by_year.R
R/mscatch.R
R/output_data.R
R/plot_landings_by_type.R
R/plot_length_histograms.R
R/plot_length_sample_table.R
R/plot_lengths_by_type.R
R/plot_market_code_by_time.R
R/plot_market_codes.R
R/speciesLookupTable.R
R/update_early_years.R
R/update_early_years_semester.R
R/update_length_samples.R
R/write_to_logfile.R
README.Rmd
README.md
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL-NEC.PNG
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.cpg
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.dbf
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.prj
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.sbn
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.sbx
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.shp
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.shp.xml
data-raw/EPU_WITH_ESTUARIES/EPUS_FULL.shx
data-raw/Grid_10minSQ/TMSQ.dbf
data-raw/Grid_10minSQ/TMSQ.prj
data-raw/Grid_10minSQ/TMSQ.sbn
data-raw/Grid_10minSQ/TMSQ.sbx
data-raw/Grid_10minSQ/TMSQ.shp
data-raw/Grid_10minSQ/TMSQ.shx
data-raw/Grid_10minSQ/tmsq.lyr
data-raw/R/create_species_rules_table.r
data-raw/R/test_data_pull.R
data-raw/create_EPU_10minsq.r
data-raw/create_hex.R
data-raw/create_market_code_species_itis.R
data-raw/create_nespp3_svspp_lookup.R
data-raw/data/sampleCatch.RDS
data-raw/data/sampleExpanded.rds
data-raw/data/sampleLengths.RDS
data-raw/data/samplelogFile.txt
data/marketCodeLookupTable.RData
data/speciesLookupTable.rda
inst/extdata/EPU_10mins/10MinSq_GB.dbf
inst/extdata/EPU_10mins/10MinSq_GB.prj
inst/extdata/EPU_10mins/10MinSq_GB.shp
inst/extdata/EPU_10mins/10MinSq_GB.shx
inst/extdata/EPU_10mins/10MinSq_GOM.dbf
inst/extdata/EPU_10mins/10MinSq_GOM.prj
inst/extdata/EPU_10mins/10MinSq_GOM.shp
inst/extdata/EPU_10mins/10MinSq_GOM.shx
inst/extdata/EPU_10mins/10MinSq_MAB.dbf
inst/extdata/EPU_10mins/10MinSq_MAB.prj
inst/extdata/EPU_10mins/10MinSq_MAB.shp
inst/extdata/EPU_10mins/10MinSq_MAB.shx
inst/extdata/EPU_10mins/10MinSq_SS.dbf
inst/extdata/EPU_10mins/10MinSq_SS.prj
inst/extdata/EPU_10mins/10MinSq_SS.shp
inst/extdata/EPU_10mins/10MinSq_SS.shx
man/aggregate_landings.Rd
man/calc_numbers_at_age.Rd
man/calc_numbers_at_length.Rd
man/combine_age_data.Rd
man/create_age_length_key.Rd
man/create_yr_semester_age_length_key.Rd
man/expand_landings_to_lengths.Rd
man/figures/logo.png
man/fit_length_weight.Rd
man/get_multinomial_props.Rd
man/get_sample_data.Rd
man/get_species_data.Rd
man/get_species_object.Rd
man/get_species_object_mskeyrun.Rd
man/marketCodeLookupTable.Rd
man/mscatch.Rd
man/speciesLookupTable.Rd
mscatch.Rproj
pkgdown/_pkgdown.yml
pkgdown/favicon/favicon.ico
tests/testthat.R
vignettes/.gitignore
vignettes/REFERENCES.bib
vignettes/ageExpansion.Rmd
vignettes/aggregationRules.Rmd
vignettes/apa-annotated-bibliography.csl
vignettes/catchExpansion.Rmd
vignettes/data/gearAgg.csv
vignettes/dataNeeds.Rmd
vignettes/figures/head164744dat.PNG
vignettes/figures/head164744len.PNG
vignettes/figures/landings_by_market_cat.png
vignettes/figures/length_samples.png
vignettes/figures/length_weight_relationship_HADDOCK.png
vignettes/figures/market_category_landings.png
vignettes/figures/market_category_lengths.png
vignettes/figures/market_category_lengths_by_gear.png
vignettes/figures/market_category_qtr_landings_050.png
vignettes/figures/sampleLogFile.PNG
vignettes/mscatch.Rmd
vignettes/notes.Rmd
vignettes/numbersAtAge.rmd
vignettes/sampleFigures.Rmd
vignettes/underlyingRules.Rmd
