Man pages for NPhogat/RTqPCR
A work flow for analysis and normalization of pre-processing RT-qPCR data
| CombineTechReps | Combine technical replicates of Cq and amplification... |
| CqEffs | Compute Cq values and amplification efficiencies |
| DeltaCq | Compute delta Cq value and standard deviation of delta Cq |
| DeltaDeltaCq | Compute delta delta Cq, standard deviation of delta delta Cq... |
| DeltaDeltaCqAll | Compute delta delta Cq, standard deviation of delta delta Cq... |
| NonDetects | Remove the non-detects ('NA') of Cq and amplification... |
| NRQeffs | Compute relative expression ratio |
| NRQeffsAll | Compute normalized relative expression of all genes at one... |
| Read.LC480SampleInfo | Read sample information file of raw data of LC480 RT-qPCR |
| read.Mx3005P | To read in the raw fluorescent data of Mx3005P (Agilent)... |
| Read.Mx3005PSampleInfo | Read sample information file of raw data of Mx3005P RT-qPCR |
| read.RTqPCR | To read in the raw fluorescent data of LC480 light cycler and... |
| read.RTqPCRSampleInfo | Read sample information file of raw data of RT-qPCRs (LC480... |
| ReplaceAboveCutOff | Replace the Cq and amplification efficiency above cut off by... |
| ReplaceNAs | Replace the all the non detects of Cq and amplification... |
| ReplaceValue | Replace the specific Cq value and amplification efficiency by... |
| RTqPCRBatch-class | Class RTqPCRBatch |
| RTqPCR.dataframe | Convert the object of Class '"data.frame"' into an object of... |
| RTqPCR.gui | Run the graphical User Interface |
| RTqPCR-package | Work Flow of RT-qPCR |
