read.RTqPCRSampleInfo: Read sample information file of raw data of RT-qPCRs (LC480...

In NPhogat/RTqPCR: A work flow for analysis and normalization of pre-processing RT-qPCR data

Description

Read the .txt sample information file of raw data of experiment run on RT-qPCRs (LC480 light cycler and Mx3005P) and use the data to populate an object of "AnnodatedDataFrame".

Usage

read.RTqPCRSampleInfo(file, PCRtype, ...)

Arguments

file	Name of the file to read in.
PCRtype	The type of RT-qPCRs ("LC480" or "Mx3005P") whose file is to read in.
...	Other parameters to be passed to downstream methods.

Value

An object of "AnnodatedDataFrame".

Author(s)

Navneet Phogat, Matthias Kohl, [e-mail]

Examples

## To read in the sample information data of LC480 light cycler

SampleInfoLC480 <- file.path(path, "LC480_example_SampleInfo.txt")
samInfoLC480 <- read.RTqPCRSampleInfo(SampleInfoLC480, PCRtype = "LC480")
samInfoLC480[1:5]       ## to visualise the first five sample information data

## To read in the sample information data of Mx3005P RT-qPCR

SampleInfoMx <- file.path(path, "Mx3005P_example_SampleInfo.txt")
samInfoMx <- read.RTqPCRSampleInfo(SampleInfoMx, PCRtype = "Mx3005P")
samInfoMx[1:5]     ##to visualise the first five sample information data

NPhogat/RTqPCR documentation built on July 12, 2020, 12:56 p.m.