characterdmsites: Visualization of characteristics for all DmM sites

In NWPU-903PR/Funm6AViewer: Visualization of single base differential m6A methylation sites and functional DmM genes

Description

This function is used to visualize characteristics of all DmM sites.

Usage

characterdmsites(dminfo,
                 txdb = TxDb.Hsapiens.UCSC.hg19.knownGene,
                 orgsymbol = org.Hs.egSYMBOL,
                 savepath = NA)

Arguments

dminfo	A dataframe of DmM sites information. It can be generated using summarydmdeepm6A from DMDeepm6A package result.
txdb	The txdb famate genome annotation. You need to input it similar to "TxDb.Hsapiens.UCSC.hg19.knownGene" if use other genomes instead of hg19.
orgsymbol	The gene name annotation. You need to input it similar to "org.Hs.egSYMBOL" if DefaultGenome is use other genomes instead of human genome.
savepath	The file path where to save the result

Details

This function is used to visualize characteristics of all DmM sites.

Value

The outputs of the function are:

1. DmM sites distribution on RNA;

2. Counts of DmM sites on different RNA regions;

3. Counts of hyper- and hypo- DmM sites on different RNA regions.

Author(s)

Songyao Zhang

References

Funm6AViewer: Visualization of single base differential m6A methylation sites and functional DmM genes.

NWPU-903PR/Funm6AViewer documentation built on April 25, 2021, 4:26 p.m.