getdescore: Get DE score from DE information.
In NWPU-903PR/Funm6AViewer: Visualization of single base differential m6A methylation sites and functional DmM genes
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
Get DE score from DE information.
Usage
1
2
getdescore(deseqre,
scoretype = "pval")
Arguments
deseqre
A dataframe of DE information. It can be generated using getdeinfo from input bam files.
scoretype
The value used to calculate the DE score. It can be "pval", "padj", or "log2FoldChange" denotes use the p-value, FDR or log2FoldChange of genes to calculate the DE score.
Details
Get DE score from DE information.
Value
By default, getdescore will output a named vector of DE scores. The name is the gene symbol.
Author(s)
Songyao Zhang
References
Funm6AViewer: Visualization of single base differential m6A methylation sites and functional DmM genes.
NWPU-903PR/Funm6AViewer documentation built on April 25, 2021, 4:26 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References
Description
Get DE score from DE information.
Usage
1 2 | getdescore(deseqre,
scoretype = "pval")
|
Arguments
deseqre |
A dataframe of DE information. It can be generated using getdeinfo from input bam files. |
scoretype |
The value used to calculate the DE score. It can be "pval", "padj", or "log2FoldChange" denotes use the p-value, FDR or log2FoldChange of genes to calculate the DE score. |
Details
Get DE score from DE information.
Value
By default, getdescore will output a named vector of DE scores. The name is the gene symbol.
Author(s)
Songyao Zhang
References
Funm6AViewer: Visualization of single base differential m6A methylation sites and functional DmM genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.