siggenescoreplot: Visualization of MSB scores of interested genes.

In NWPU-903PR/Funm6AViewer: Visualization of single base differential m6A methylation sites and functional DmM genes

Description

Visualization of MSB scores of interested genes.

Usage

siggenescoreplot(fdmgene,
                 siggene,
                 plotname = "FocusedGene",
                 savepath = NA,
                 sigthresh = 0.3,
                 rescore_thr = 0.8,
                 descore_thr = 0.8)

Arguments

fdmgene	A dataframe of functional DmM genes' information. It is generated using fdmdeepm6A function.
siggene	A vector of the gene symbol of interested genes to visualize
plotname	The name of the plot
savepath	The file path where to save the result
sigthresh	The threshold of the FDR used to determine whether a DmMGene is a FDmMGene
rescore_thr	The threshold of relative MSB score percentage used to determine FDmMGenes with relatively higher MSB score
descore_thr	The threshold of DE score percentage used to determine FDmMGenes with relatively higher MSB score

Details

Visualization of MSB scores along with DE scores of interested genes and FDmMGenes with relatively higher MSB scores and DE scores.

Value

By default, siggenescoreplot will output result of DmMGene’s MSB score along with DE score.

Author(s)

Songyao Zhang

References

Funm6AViewer: Visualization of single base differential m6A methylation sites and functional DmM genes.

NWPU-903PR/Funm6AViewer documentation built on April 25, 2021, 4:26 p.m.