Files in NeilPearson-Lilly/MethyLiution
MethyLiution: A QC Pipeline For Methylation Data
.Rbuildignore
.gitignore
DESCRIPTION
MethylationPipeline.Rproj
NAMESPACE
NEWS
R/MethyLiution.R
R/utilities.r
README.md
apache-license-2.0.md
data/probe_data.Rdata
man/checkReportedSex.Rd
man/chooseBestArray.Rd
man/cite_me.Rd
man/colourAdjustment.Rd
man/detectOutliers.Rd
man/findSurrogateVariables.Rd
man/normalisation.Rd
man/probe_data.Rd
man/quantileNormalisation.Rd
man/readData.Rd
man/removeAssaysWithMissingMetadata.Rd
man/removeSnpProbesAndImprintingGenes.Rd
man/runPipeline.Rd
man/setColumnNames.Rd
vignettes/CheckBMIQ-GSM2309184_200134080019_R08C01.pdf
vignettes/GSE86831_meta.csv
vignettes/MethyLiution.R
vignettes/MethyLiution.Rmd
vignettes/MethyLiution.html
vignettes/MethyLiution_vignette.zip
vignettes/QC02_plot_control_probes.pdf
vignettes/QC04_Detection_Failure_Table_By_Probe.csv
vignettes/QC05_density.pdf
vignettes/QC05_methy_colorBias.pdf
vignettes/QC05_outliers.pdf
vignettes/QC06_afterColorAdj_sum_colorBias.pdf
vignettes/QC07_afterNorm_density.pdf
vignettes/QC10_SVs.csv
