checkReportedSex: Step 3: Check that metadata for samples matches inferences
In NeilPearson-Lilly/MethyLiution: MethyLiution: A QC Pipeline For Methylation Data

This probably isn't something you want to run directly. Just use the runPipeline() function.

1 2	checkReportedSex(begin, mset_file, logfile, gender_stringent, sex_label_cluster_file, outdir, col.name = NULL, mset.lumi = NULL)

`begin`	Step the pipeline begins at
`mset_file`	Path to file in which dataset object is stored between steps (auto-filled by runPipeline() function)
`logfile`	Path to log file (auto-filled by runPipeline() function)
`gender_stringent`	Should the pipeline discard samples where inferred gender is inconsistent with metadata?
`sex_label_cluster_file`	Path to file where probe QC information will be written (auto-filled by runPipeline() function)
`outdir`	Path to output directory
`col.name`	List of column names, generated by setColumnNames() (auto-filled by runPipeline() function)
`mset.lumi`	Microarray dataset object (auto-filled by runPipeline() function)