Description Usage Arguments Value
This probably isn't something you want to run directly. Just use the runPipeline() function.
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datadir |
Path to directory containing IDAT files |
metafile |
Path to file containing experimental metadata |
logfile |
Path to log file (auto-filled by runPipeline() function) |
mset_file |
Path to file in which dataset object is stored between steps (auto-filled by runPipeline() function) |
array |
Microarray probeset used: valid options are "450K" and "EPIC" (default "450K") |
threads |
Number of threads to run certain tasks in parallel |
FDB |
Methylation annotation set (auto-filled by runPipeline() function) |
List - column names and methylumi dataset
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