setModelEquation: Set the model equation

In Newmi1988/seeds: Estimate Hidden Inputs using the Dynamic Elastic Net

Description

Set the model equation of the system in an odeModel object. Has to be a function that can be used with the deSolve package.

Usage

setModelEquation(odeModel, func)

## S4 method for signature 'odeModel'
setModelEquation(odeModel, func)

Arguments

odeModel	an object of the class odeModel
func	function describing the ode equation of the model

Value

an object of odeModel

Examples

data("uvbModel")

uvbModelEq <- function(t,x,parameters) {
  with (as.list(parameters),{
    
    dx1 = ((-2) * ((ka1 * (x[1]^2) * (x[4]^2)) - (kd1 * x[5])) + 
             (-2) * ((ka2 * (x[1]^2) * x[2]) - (kd2 * x[3])) + 
             ((ks1 *((1) + (uv * n3 * (x[11] + fhy3_s))))  - 
                (kdr1 * ((1) + (n1 * uv)) * x[1])))
    dx2 = ((-1) * ((ka2*(x[1]^2) * x[2]) - (kd2 * x[3])) +
             (-1) * ((ka4 * x[2] * x[12]) - (kd4 * x[13])))
    dx3 = (((ka2 * (x[1]^2) * x[2]) - (kd2*  x[3]))) 
    dx4 = ((-2) * (k1*(x[4]^2)) + (2) * (k2 * x[6]) + 
             (-2) * ((ka1 * (x[1]^2)* (x[4]^2)) - (kd1 * x[5])) +
             (-1)* (ka3 * x[4] *x[7]))
    dx5 =  (((ka1 * (x[1]^2) * (x[4]^2)) -(kd1 * x[5])))
    dx6 = ((-1) * (k2 * x[6]) +  (k1 * (x[4]^2)) +(kd3 * (x[8]^2)))
    dx7 = ((-1) * (ka3 * x[4] * x[7]) + ((ks2 * ((1) + (uv * x[5]))) - 
                                           (kdr2 * x[7])) + (2) * (kd3 * (x[8]^2)))
    dx8 = ((-2) * (kd3 * x[8]^2) + (ka3 * x[4] * x[7])) 
    dx9  = 0 
    dx10 = 0
    dx11 =  (((ks3 * ((1) + (n2 * uv))) -(kdr3 * (((x[3] / (kdr3a + x[3])) + 
            (x[13] / (kdr3b + x[13]))) -(x[5] / (ksr + x[5]))) *  x[11])))
    dx12 = ((-1) * (ka4 * x[2] * x[12]) + (kd4 * x[13]))
    dx13 =((ka4 * x[2] * x[12]) - (kd4 * x[13]))
    
    list(c(dx1,dx2,dx3,dx4,dx5,dx6,dx7,dx8,dx9,dx10,dx11,dx12,dx13))
  })
}

setModelEquation(uvbModel,uvbModelEq)

Newmi1988/seeds documentation built on Aug. 7, 2021, 8:22 p.m.