NVTadvancedmaplot: Plot the MA-plot of a NVTobject with ggplot2

In NexusX/NVT: Normalization visualisation tool

Description

Plot the MA-plot of a NVTobject with ggplot2

Usage

NVTadvancedmaplot(NVTdataobj, p_cex = 1, t_cex = 1, l_cex = 1)

Arguments

NVTdataobj	A previously initialized and normalized NVTobject
p_cex	Point size factor [default = 1]
t_cex	Title size factor [default = 1]
l_cex	Label size factor [default = 1]

Value

Plots the MA-plot with the housekeeping genes indicated

Examples

library("NVT")
data(myexp1)
data(myexp2)
data(mylen)
mylist1<-c("ENSG00000111640","ENSG00000163631","ENSG00000075624","ENSG00000172053",
"ENSG00000165704","ENSG00000196839","ENSG00000168938","ENSG00000177700")

mynvt <- NVTinit(mylist1,myexp1,myexp2,"N")
mynorm <- NVTnormalize(mynvt)

NVTadvancedmaplot(mynorm,2,2,2)

NexusX/NVT documentation built on June 25, 2021, 11:58 p.m.