NVTtestall: Calculate the chosen correclation of the housekeeping genes...

In NexusX/NVT: Normalization visualisation tool

Description

Calculate the chosen correclation of the housekeeping genes of an initialized NVTobject for all normalization methods

Usage

NVTtestall(NVTdataobj, cmethod = "p", verbose = TRUE)

Arguments

NVTdataobj	A previously initialzed and normalized NVTobject
cmethod	Pearson correlation (p), root mean square deviation (rmsd) or mean absolute error (mae) [default="p"]
verbose	mode on or off (T/F) [default=TRUE]

Value

Sorted pearson correlation coefficients, RMSD or MAE of the normalized housekeeping genes between the samples

Examples

library("NVT")
data(myexp1)
data(myexp2)
data(mylen)
mylist1<-c("ENSG00000111640","ENSG00000163631","ENSG00000075624","ENSG00000172053",
"ENSG00000165704","ENSG00000196839","ENSG00000168938","ENSG00000177700")

mynvt <- NVTinit(mylist1,myexp1,myexp2,"N",mylen)

NVTtestall(mynvt,"p")

NexusX/NVT documentation built on June 25, 2021, 11:58 p.m.