NVTrmsd: Calculate the root mean squared deviation (RMSD) of the...
In NexusX/NVT: Normalization visualisation tool
Description
Usage
Arguments
Value
Examples
Description
Calculate the root mean squared deviation (RMSD) of the housekeeping genes of an initialized and normalized NVTobject
Usage
1
NVTrmsd(NVTdataobj)
Arguments
NVTdataobj
A previously initialized and normalized NVTobject
Value
Root mean squared deviation (RMSD) of the normalized housekeeping genes between the samples
Examples
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library("NVT")
data(myexp1)
data(myexp2)
data(mylen)
mylist1<-c("ENSG00000111640","ENSG00000163631","ENSG00000075624","ENSG00000172053",
"ENSG00000165704","ENSG00000196839","ENSG00000168938","ENSG00000177700")
mynvt <- NVTinit(mylist1,myexp1,myexp2,"TMM")
mynorm <- NVTnormalize(mynvt)
NVTrmsd(mynorm)
NexusX/NVT documentation built on June 25, 2021, 11:58 p.m.
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Description Usage Arguments Value Examples
Description
Calculate the root mean squared deviation (RMSD) of the housekeeping genes of an initialized and normalized NVTobject
Usage
1 | NVTrmsd(NVTdataobj)
|
Arguments
NVTdataobj |
A previously initialized and normalized NVTobject |
Value
Root mean squared deviation (RMSD) of the normalized housekeeping genes between the samples
Examples
1 2 3 4 5 6 7 8 9 10 11 | library("NVT")
data(myexp1)
data(myexp2)
data(mylen)
mylist1<-c("ENSG00000111640","ENSG00000163631","ENSG00000075624","ENSG00000172053",
"ENSG00000165704","ENSG00000196839","ENSG00000168938","ENSG00000177700")
mynvt <- NVTinit(mylist1,myexp1,myexp2,"TMM")
mynorm <- NVTnormalize(mynvt)
NVTrmsd(mynorm)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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