plot_pwm_as_hm: Visualise a positional weight matrix as a heatmap
In Ni-Ar/niar: Nice Interactive Analysis with R
plot_pwm_as_hm R Documentation
Visualise a positional weight matrix as a heatmap
Description
Visualise a positional weight matrix as a heatmap
Usage
plot_pwm_as_hm(long_df, cell_txt_size = 3, axis_txt_size = 10)
Arguments
long_df
A data.frame obtained with df2pwd(long_format = TRUE)
cell_txt_size
Text size of the heatmap cells that corresponds to the letter weight in that position. Default 3.
axis_txt_size
Text size of axis labels. Default 10.
Value
A ggplot plot
Examples
df2pwm(data, ID_col = 'Species', alphabet = c('a', 'c', 'g', 't'), long_format = T) |>
plot_pwm_as_hm()
Ni-Ar/niar documentation built on Feb. 3, 2025, 9:25 a.m.
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| plot_pwm_as_hm | R Documentation |
Visualise a positional weight matrix as a heatmap
Description
Visualise a positional weight matrix as a heatmap
Usage
plot_pwm_as_hm(long_df, cell_txt_size = 3, axis_txt_size = 10)
Arguments
long_df |
A data.frame obtained with |
cell_txt_size |
Text size of the heatmap cells that corresponds to the letter weight in that position. Default 3. |
axis_txt_size |
Text size of axis labels. Default 10. |
Value
A ggplot plot
Examples
df2pwm(data, ID_col = 'Species', alphabet = c('a', 'c', 'g', 't'), long_format = T) |>
plot_pwm_as_hm()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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