save_counts: Save the counts of a DESeq2 object.

In Ni-Ar/niar: Nice Interactive Analysis with R

Save the counts of a DESeq2 object.

Description

Save the counts of a DESeq2 object.

Usage

save_counts(deseq_dataset, name, out_dir, tidy = TRUE, ...)

Arguments

deseq_dataset	A dds
name	A name for the output file
out_dir	Path to the output directory
tidy	Logical, whethere to reshape the data into a long (TRUE) or keep it as wide ('FALSE') format.
...	extra arguments passed to dds2counts() function, like counts_are_genes = T|F or norm_counts = T|F

Value

Nothing, this function writes a file

Examples

save_counts(dds, name = "Your_comparison_long", out_dir = "/path/to/dir")

Ni-Ar/niar documentation built on Feb. 3, 2025, 9:25 a.m.