combinedPlot: combinePlot

In Norisama/VFtree: visualization of combined Virulence Factors and Phylogenetic Tree

Description

The main plotting function to combine the two parts of the workflow

Usage

combinedPlot(inputTable, inputTree, inputNum)

Arguments

inputTable	input the generated csv file with pathogenic potential information of each virulence factor of each strain
inputTree	input the generated nwk file of the taxonomic information between strains
inputNum	the number of input strains

Details

This function is used to plot a tree from the newick input, on top of it plot the factor information according to each strain of the tree and plot as rings around the tree

Value

Combined the plotting of circular tree and factor ring from the data of tree(newick file) and table(csv/tsv file)

Examples

## Not run: 
result_plot <- combinedPlot(inputTable = VF25_2,
                                inputTree = Tree25,
                                inputNum = 25)

## End(Not run)

Norisama/VFtree documentation built on Dec. 8, 2019, 9:28 a.m.