ringPlot: ringPlot

In Norisama/VFtree: visualization of combined Virulence Factors and Phylogenetic Tree

Description

This function is used to plot the rings of factoer present/absent of that specific strain mapped in the tree based on the data from the table, the same id name mapped to tree data loop the column of the ring_table_data to plot each ring aroud the tree

Usage

ringPlot(ring_table_data, radius_data, tree_max_depth,
  present_rate = 0.5, tree_plot)

Arguments

ring_table_data	data frame from table_processed
radius_data	data frame of radius and ring
tree_max_depth	the max depth of the tree
present_rate	the rate for ploting the factor as present/absent
tree_plot	the tree plotting from ggplot

Value

The ring plot based on the tree plot

Norisama/VFtree documentation built on Dec. 8, 2019, 9:28 a.m.