adjustedKm | Compute a weight-adjusted Kaplan-Meier curve |
checkCmInstallation | Check is CohortMethod and its dependencies are correctly... |
CohortMethodData-class | Cohort Method Data |
cohortMethodDataSimulationProfile | A simulation profile |
CohortMethod-package | CohortMethod: New-User Cohort Method with Large Scale... |
computeCovariateBalance | Compute covariate balance before and after PS adjustment |
computeEquipoise | Compute fraction in equipoise |
computeMdrr | Compute the minimum detectable relative risk |
computePsAuc | Compute the area under the ROC curve |
createCmAnalysis | Create a CohortMethod analysis specification |
createCmDiagnosticThresholds | Create CohortMethod diagnostics thresholds |
createCmTable1 | Create a table 1 |
createCohortMethodDataSimulationProfile | Create simulation profile |
createComputeCovariateBalanceArgs | Create a parameter object for the function... |
createCreatePsArgs | Create a parameter object for the function createPs |
createCreateStudyPopulationArgs | Create a parameter object for the function... |
createDefaultMultiThreadingSettings | Create default CohortMethod multi-threading settings |
createFitOutcomeModelArgs | Create a parameter object for the function fitOutcomeModel |
createGetDbCohortMethodDataArgs | Create a parameter object for the function... |
createMatchOnPsAndCovariatesArgs | Create a parameter object for the function... |
createMatchOnPsArgs | Create a parameter object for the function matchOnPs |
createMultiThreadingSettings | Create CohortMethod multi-threading settings |
createOutcome | Create outcome definition |
createPs | Create propensity scores |
createResultsDataModel | Create the results data model tables on a database server. |
createStratifyByPsAndCovariatesArgs | Create a parameter object for the function... |
createStratifyByPsArgs | Create a parameter object for the function stratifyByPs |
createStudyPopulation | Create a study population |
createTargetComparatorOutcomes | Create target-comparator-outcomes combinations. |
createTrimByIptwArgs | Create a parameter object for the function trimByIptw |
createTrimByPsArgs | Create a parameter object for the function trimByPs |
createTrimByPsToEquipoiseArgs | Create a parameter object for the function... |
createTruncateIptwArgs | Create a parameter object for the function truncateIptw |
drawAttritionDiagram | Draw the attrition diagram |
exportToCsv | Export cohort method results to CSV files |
fitOutcomeModel | Create an outcome model, and compute the relative risk |
getAttritionTable | Get the attrition table for a population |
getDataMigrator | Get database migrations instance |
getDbCohortMethodData | Get the cohort data from the server |
getDefaultCmTable1Specifications | Get the default table 1 specifications |
getFileReference | Get file reference |
getFollowUpDistribution | Get the distribution of follow-up time |
getGeneralizabilityTable | Get information on generalizability |
getInteractionResultsSummary | Get a summary report of the analyses results |
getOutcomeModel | Get the outcome model |
getPsModel | Get the propensity model |
getResultsDataModelSpecifications | Get specifications for CohortMethod results data model |
getResultsSummary | Get a summary report of the analyses results |
insertExportedResultsInSqlite | Insert exported results into a SQLite database |
isCohortMethodData | Check whether an object is a CohortMethodData object |
launchResultsViewer | Launch Shiny app using |
launchResultsViewerUsingSqlite | Launch Shiny app using a SQLite database |
loadCmAnalysisList | Load a list of cmAnalysis from file |
loadCohortMethodData | Load the cohort method data from a file |
loadTargetComparatorOutcomesList | Load a list of targetComparatorOutcomes from file |
matchOnPs | Match persons by propensity score |
matchOnPsAndCovariates | Match by propensity score as well as other covariates |
migrateDataModel | Migrate Data model |
plotCovariateBalanceOfTopVariables | Plot variables with largest imbalance |
plotCovariateBalanceScatterPlot | Create a scatterplot of the covariate balance |
plotCovariatePrevalence | Plot covariate prevalence |
plotFollowUpDistribution | Plot the distribution of follow-up time |
plotKaplanMeier | Plot the Kaplan-Meier curve |
plotPs | Plot the propensity score distribution |
plotTimeToEvent | Plot time-to-event |
runCmAnalyses | Run a list of analyses |
saveCmAnalysisList | Save a list of cmAnalysis to file |
saveCohortMethodData | Save the cohort method data to file |
saveTargetComparatorOutcomesList | Save a list of targetComparatorOutcomes to file |
simulateCohortMethodData | Generate simulated data |
stratifyByPs | Stratify persons by propensity score |
stratifyByPsAndCovariates | Stratify persons by propensity score and other covariates |
trimByIptw | Remove subjects with a high IPTW |
trimByPs | Trim persons by propensity score |
trimByPsToEquipoise | Keep only persons in clinical equipoise |
truncateIptw | Truncate IPTW values |
uploadResults | Upload results to the database server. |
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