Man pages for OHDSI/CohortMethod
New-User Cohort Method with Large Scale Propensity and Outcome Models
| adjustedKm | Compute a weight-adjusted Kaplan-Meier curve |
| checkCmInstallation | Check is CohortMethod and its dependencies are correctly... |
| CohortMethodData-class | Cohort Method Data |
| cohortMethodDataSimulationProfile | A simulation profile |
| CohortMethod-package | CohortMethod: New-User Cohort Method with Large Scale... |
| computeCovariateBalance | Compute covariate balance before and after PS adjustment |
| computeEquipoise | Compute fraction in equipoise |
| computeMdrr | Compute the minimum detectable relative risk |
| computePsAuc | Compute the area under the ROC curve |
| createCmAnalysis | Create a CohortMethod analysis specification |
| createCmDiagnosticThresholds | Create CohortMethod diagnostics thresholds |
| createCmTable1 | Create a table 1 |
| createCohortMethodDataSimulationProfile | Create simulation profile |
| createComputeCovariateBalanceArgs | Create a parameter object for the function... |
| createCreatePsArgs | Create a parameter object for the function createPs |
| createCreateStudyPopulationArgs | Create a parameter object for the function... |
| createDefaultMultiThreadingSettings | Create default CohortMethod multi-threading settings |
| createFitOutcomeModelArgs | Create a parameter object for the function fitOutcomeModel |
| createGetDbCohortMethodDataArgs | Create a parameter object for the function... |
| createMatchOnPsAndCovariatesArgs | Create a parameter object for the function... |
| createMatchOnPsArgs | Create a parameter object for the function matchOnPs |
| createMultiThreadingSettings | Create CohortMethod multi-threading settings |
| createOutcome | Create outcome definition |
| createPs | Create propensity scores |
| createResultsDataModel | Create the results data model tables on a database server. |
| createStratifyByPsAndCovariatesArgs | Create a parameter object for the function... |
| createStratifyByPsArgs | Create a parameter object for the function stratifyByPs |
| createStudyPopulation | Create a study population |
| createTargetComparatorOutcomes | Create target-comparator-outcomes combinations. |
| createTrimByIptwArgs | Create a parameter object for the function trimByIptw |
| createTrimByPsArgs | Create a parameter object for the function trimByPs |
| createTrimByPsToEquipoiseArgs | Create a parameter object for the function... |
| createTruncateIptwArgs | Create a parameter object for the function truncateIptw |
| drawAttritionDiagram | Draw the attrition diagram |
| exportToCsv | Export cohort method results to CSV files |
| fitOutcomeModel | Create an outcome model, and compute the relative risk |
| getAttritionTable | Get the attrition table for a population |
| getDataMigrator | Get database migrations instance |
| getDbCohortMethodData | Get the cohort data from the server |
| getDefaultCmTable1Specifications | Get the default table 1 specifications |
| getFileReference | Get file reference |
| getFollowUpDistribution | Get the distribution of follow-up time |
| getGeneralizabilityTable | Get information on generalizability |
| getInteractionResultsSummary | Get a summary report of the analyses results |
| getOutcomeModel | Get the outcome model |
| getPsModel | Get the propensity model |
| getResultsDataModelSpecifications | Get specifications for CohortMethod results data model |
| getResultsSummary | Get a summary report of the analyses results |
| insertExportedResultsInSqlite | Insert exported results into a SQLite database |
| isCohortMethodData | Check whether an object is a CohortMethodData object |
| launchResultsViewer | Launch Shiny app using |
| launchResultsViewerUsingSqlite | Launch Shiny app using a SQLite database |
| loadCmAnalysisList | Load a list of cmAnalysis from file |
| loadCohortMethodData | Load the cohort method data from a file |
| loadTargetComparatorOutcomesList | Load a list of targetComparatorOutcomes from file |
| matchOnPs | Match persons by propensity score |
| matchOnPsAndCovariates | Match by propensity score as well as other covariates |
| migrateDataModel | Migrate Data model |
| plotCovariateBalanceOfTopVariables | Plot variables with largest imbalance |
| plotCovariateBalanceScatterPlot | Create a scatterplot of the covariate balance |
| plotCovariatePrevalence | Plot covariate prevalence |
| plotFollowUpDistribution | Plot the distribution of follow-up time |
| plotKaplanMeier | Plot the Kaplan-Meier curve |
| plotPs | Plot the propensity score distribution |
| plotTimeToEvent | Plot time-to-event |
| runCmAnalyses | Run a list of analyses |
| saveCmAnalysisList | Save a list of cmAnalysis to file |
| saveCohortMethodData | Save the cohort method data to file |
| saveTargetComparatorOutcomesList | Save a list of targetComparatorOutcomes to file |
| simulateCohortMethodData | Generate simulated data |
| stratifyByPs | Stratify persons by propensity score |
| stratifyByPsAndCovariates | Stratify persons by propensity score and other covariates |
| trimByIptw | Remove subjects with a high IPTW |
| trimByPs | Trim persons by propensity score |
| trimByPsToEquipoise | Keep only persons in clinical equipoise |
| truncateIptw | Truncate IPTW values |
| uploadExportedResults | Upload exported results to a database |
| uploadResults | Upload results to the database server. |
