createCmAnalysis: Create a CohortMethod analysis specification

In OHDSI/CohortMethod: New-User Cohort Method with Large Scale Propensity and Outcome Models

Create a CohortMethod analysis specification

Description

Create a CohortMethod analysis specification

Usage

createCmAnalysis(
  analysisId = 1,
  description = "",
  getDbCohortMethodDataArgs,
  createStudyPopArgs,
  createPsArgs = NULL,
  trimByPsArgs = NULL,
  trimByPsToEquipoiseArgs = NULL,
  trimByIptwArgs = NULL,
  truncateIptwArgs = NULL,
  matchOnPsArgs = NULL,
  matchOnPsAndCovariatesArgs = NULL,
  stratifyByPsArgs = NULL,
  stratifyByPsAndCovariatesArgs = NULL,
  computeSharedCovariateBalanceArgs = NULL,
  computeCovariateBalanceArgs = NULL,
  fitOutcomeModelArgs = NULL
)

Arguments

analysisId	An integer that will be used later to refer to this specific set of analysis choices.
description	A short description of the analysis.
getDbCohortMethodDataArgs	An object representing the arguments to be used when calling the getDbCohortMethodData() function.
createStudyPopArgs	An object representing the arguments to be used when calling the createStudyPopulation() function.
createPsArgs	An object representing the arguments to be used when calling the createPs() function.
trimByPsArgs	An object representing the arguments to be used when calling the trimByPs() function.
trimByPsToEquipoiseArgs	An object representing the arguments to be used when calling the trimByPsToEquipoise() function.
trimByIptwArgs	An object representing the arguments to be used when calling the trimByIptw() function.
truncateIptwArgs	An object representing the arguments to be used when calling the truncateIptw() function.
matchOnPsArgs	An object representing the arguments to be used when calling the matchOnPs() function.
matchOnPsAndCovariatesArgs	An object representing the arguments to be used when calling the matchOnPsAndCovariates() function.
stratifyByPsArgs	An object representing the arguments to be used when calling the stratifyByPs() function.
stratifyByPsAndCovariatesArgs	An object representing the arguments to be used when calling the stratifyByPsAndCovariates() function.
computeSharedCovariateBalanceArgs	An object representing the arguments to be used when calling the computeCovariateBalance() function per target-comparator-analysis.
computeCovariateBalanceArgs	An object representing the arguments to be used when calling the computeCovariateBalance() function per target-comparator-outcome-analysis.
fitOutcomeModelArgs	An object representing the arguments to be used when calling the fitOutcomeModel() function.

Details

Create a set of analysis choices, to be used with the runCmAnalyses() function.

Providing a NULL value for any of the argument applies the corresponding step will not be executed. For example, if createPsArgs = NULL, no propensity scores will be computed.

OHDSI/CohortMethod documentation built on Feb. 9, 2024, 9:01 a.m.