Files in OHDSI/CohortMethod

New-User Cohort Method with Large Scale Propensity and Outcome Models

.Rbuildignore

.cproject

.gitattributes

.github/pull_request_template.md

.github/workflows/R_CMD_check_Hades.yml

.github/workflows/R_CMD_check_main_weekly.yaml

.gitignore

.project

.settings/org.eclipse.cdt.managedbuilder.core.prefs

CohortMethod.Rproj

DESCRIPTION

NAMESPACE

NEWS.md R/Analyses.R R/AttritionDiagram.R R/Balance.R R/CohortMethod.R R/CohortMethodData.R R/CreateArgFunctions.R R/DataLoadingSaving.R R/Export.R R/HelperFunctions.R R/KaplanMeier.R R/OutcomeModels.R R/Power.R R/PsFunctions.R R/RcppExports.R R/ResultsDataModel.R R/RunAnalyses.R R/Simulation.R R/StudyPopulation.R R/Table1.R R/Viewer.R README.md

_pkgdown.yml

compare_versions

data/cohortMethodDataSimulationProfile.rda

deploy.sh

docs/404.html

docs/articles/MultipleAnalyses.html

docs/articles/MultipleAnalyses_files/anchor-sections-1.0/anchor-sections.css

docs/articles/MultipleAnalyses_files/anchor-sections-1.0/anchor-sections.js

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docs/articles/MultipleAnalyses_files/header-attrs-2.5/header-attrs.js

docs/articles/MultipleAnalyses_files/header-attrs-2.6/header-attrs.js

docs/articles/SingleStudies.html

docs/articles/SingleStudies_files/anchor-sections-1.0/anchor-sections.css

docs/articles/SingleStudies_files/anchor-sections-1.0/anchor-sections.js

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docs/articles/SingleStudies_files/header-attrs-2.10/header-attrs.js

docs/articles/SingleStudies_files/header-attrs-2.5/header-attrs.js

docs/articles/SingleStudies_files/header-attrs-2.6/header-attrs.js

docs/articles/index.html

docs/articles/shinyApp.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/pull_request_template.html

docs/reference/CohortMethod-package.html

docs/reference/CohortMethod.html

docs/reference/CohortMethodData-class.html

docs/reference/Rplot001.png

docs/reference/adjustedKm.html

docs/reference/checkCmInstallation.html

docs/reference/cohortMethodDataSimulationProfile.html

docs/reference/computeCovariateBalance.html

docs/reference/computeEquipoise.html

docs/reference/computeMdrr.html

docs/reference/computePsAuc.html

docs/reference/constructEras.html

docs/reference/createCmAnalysis.html

docs/reference/createCmDiagnosticThresholds.html

docs/reference/createCmTable1.html

docs/reference/createCohortMethodDataSimulationProfile.html

docs/reference/createComputeCovariateBalanceArgs.html

docs/reference/createCreatePsArgs.html

docs/reference/createCreateStudyPopulationArgs.html

docs/reference/createDefaultMultiThreadingSettings.html

docs/reference/createFitOutcomeModelArgs.html

docs/reference/createGetDbCohortMethodDataArgs.html

docs/reference/createMatchOnPsAndCovariatesArgs.html

docs/reference/createMatchOnPsArgs.html

docs/reference/createMultiThreadingSettings.html

docs/reference/createOutcome.html

docs/reference/createPs.html

docs/reference/createResultsDataModel.html

docs/reference/createStratifyByPsAndCovariatesArgs.html

docs/reference/createStratifyByPsArgs.html

docs/reference/createStudyPopulation.html

docs/reference/createTargetComparatorOutcomes.html

docs/reference/createTrimByIptwArgs.html

docs/reference/createTrimByPsArgs.html

docs/reference/createTrimByPsToEquipoiseArgs.html

docs/reference/createTruncateIptwArgs.html

docs/reference/drawAttritionDiagram.html

docs/reference/exportToCsv.html

docs/reference/fitOutcomeModel.html

docs/reference/getAttritionTable.html

docs/reference/getDataMigrator.html

docs/reference/getDbCohortMethodData.html

docs/reference/getDefaultCmTable1Specifications.html

docs/reference/getFileReference.html

docs/reference/getFollowUpDistribution.html

docs/reference/getGeneralizabilityTable.html

docs/reference/getInteractionResultsSummary.html

docs/reference/getOutcomeModel.html

docs/reference/getPsModel.html

docs/reference/getResultsDataModel.html

docs/reference/getResultsDataModelSpecifications.html

docs/reference/getResultsSummary.html

docs/reference/grepCovariateNames.html

docs/reference/index.html

docs/reference/insertDbPopulation.html

docs/reference/insertExportedResultsInSqlite.html

docs/reference/isCohortMethodData.html

docs/reference/launchResultsViewer.html

docs/reference/launchResultsViewerUsingSqlite.html

docs/reference/loadCmAnalysisList.html

docs/reference/loadCohortMethodData.html

docs/reference/loadTargetComparatorOutcomesList.html

docs/reference/matchOnPs.html

docs/reference/matchOnPsAndCovariates.html

docs/reference/migrateDataModel.html

docs/reference/plotCovariateBalanceOfTopVariables.html

docs/reference/plotCovariateBalanceScatterPlot.html

docs/reference/plotCovariatePrevalence.html

docs/reference/plotFollowUpDistribution.html

docs/reference/plotKaplanMeier.html

docs/reference/plotPs-1.png

docs/reference/plotPs.html

docs/reference/plotTimeToEvent.html

docs/reference/runCmAnalyses.html

docs/reference/saveCmAnalysisList.html

docs/reference/saveCohortMethodData.html

docs/reference/saveTargetComparatorOutcomesList.html

docs/reference/simulateCohortMethodData.html

docs/reference/stratifyByPs.html

docs/reference/stratifyByPsAndCovariates.html

docs/reference/summarizeAnalyses.html

docs/reference/trimByIptw.html

docs/reference/trimByPs.html

docs/reference/trimByPsToEquipoise.html

docs/reference/truncateIptw.html

docs/reference/uploadExportedResults.html

docs/reference/uploadResults.html

docs/sitemap.xml

extras/AdjKmCurveEval.R extras/CohortMethod.pdf extras/CreateResultsSchemaForTesting.R extras/InvestigateValueOfGroupings.R extras/MultiAnalysesVignetteDataFetch.R extras/PackageMaintenance.R extras/SimulationDataFetch.R extras/SingleStudyVignetteDataFetch.R extras/TestCode.R extras/TestCovBalance.R extras/TestCovBalanceSampling.R extras/TestProbabilisticCoxModel.R extras/TestSimCode.R extras/WeightedStratification.R

extras/balanceScatterplot.png

extras/ps.png

inst/Results_Eunomia.zip

inst/csv/Table1Specs.csv

inst/csv/resultsDataModelSpecification.csv

inst/doc/MultipleAnalyses.pdf inst/doc/SingleStudies.pdf

inst/sql/CountCohorts.sql

inst/sql/CountOverallExposedPopulation.sql

inst/sql/CreateCohorts.sql

inst/sql/CreateResultsDataModel.sql

inst/sql/GetCohorts.sql

inst/sql/GetOutcomes.sql

inst/sql/RemoveCohortTempTables.sql

inst/sql/SampleCohorts.sql

inst/sql/coxibVsNonselVsGiBleed.sql

inst/sql/sql_server/migrations/Migration_1-v5_2_0.sql

man-roxygen/CohortMethodData.R man-roxygen/Cohorts.R man/CohortMethod-package.Rd man/CohortMethodData-class.Rd man/adjustedKm.Rd man/checkCmInstallation.Rd man/cohortMethodDataSimulationProfile.Rd man/computeCovariateBalance.Rd man/computeEquipoise.Rd man/computeMdrr.Rd man/computePsAuc.Rd man/createCmAnalysis.Rd man/createCmDiagnosticThresholds.Rd man/createCmTable1.Rd man/createCohortMethodDataSimulationProfile.Rd man/createComputeCovariateBalanceArgs.Rd man/createCreatePsArgs.Rd man/createCreateStudyPopulationArgs.Rd man/createDefaultMultiThreadingSettings.Rd man/createFitOutcomeModelArgs.Rd man/createGetDbCohortMethodDataArgs.Rd man/createMatchOnPsAndCovariatesArgs.Rd man/createMatchOnPsArgs.Rd man/createMultiThreadingSettings.Rd man/createOutcome.Rd man/createPs.Rd man/createResultsDataModel.Rd man/createStratifyByPsAndCovariatesArgs.Rd man/createStratifyByPsArgs.Rd man/createStudyPopulation.Rd man/createTargetComparatorOutcomes.Rd man/createTrimByIptwArgs.Rd man/createTrimByPsArgs.Rd man/createTrimByPsToEquipoiseArgs.Rd man/createTruncateIptwArgs.Rd man/drawAttritionDiagram.Rd man/exportToCsv.Rd man/fitOutcomeModel.Rd man/getAttritionTable.Rd man/getDataMigrator.Rd man/getDbCohortMethodData.Rd man/getDefaultCmTable1Specifications.Rd man/getFileReference.Rd man/getFollowUpDistribution.Rd man/getGeneralizabilityTable.Rd man/getInteractionResultsSummary.Rd man/getOutcomeModel.Rd man/getPsModel.Rd man/getResultsDataModelSpecifications.Rd man/getResultsSummary.Rd man/insertExportedResultsInSqlite.Rd man/isCohortMethodData.Rd man/launchResultsViewer.Rd man/launchResultsViewerUsingSqlite.Rd man/loadCmAnalysisList.Rd man/loadCohortMethodData.Rd man/loadTargetComparatorOutcomesList.Rd man/matchOnPs.Rd man/matchOnPsAndCovariates.Rd man/migrateDataModel.Rd man/plotCovariateBalanceOfTopVariables.Rd man/plotCovariateBalanceScatterPlot.Rd man/plotCovariatePrevalence.Rd man/plotFollowUpDistribution.Rd man/plotKaplanMeier.Rd man/plotPs.Rd man/plotTimeToEvent.Rd man/runCmAnalyses.Rd man/saveCmAnalysisList.Rd man/saveCohortMethodData.Rd man/saveTargetComparatorOutcomesList.Rd man/simulateCohortMethodData.Rd man/stratifyByPs.Rd man/stratifyByPsAndCovariates.Rd man/trimByIptw.Rd man/trimByPs.Rd man/trimByPsToEquipoise.Rd man/truncateIptw.Rd man/uploadExportedResults.Rd man/uploadResults.Rd

src/AdjustedKm.cpp

src/AdjustedKm.h

src/Auc.cpp

src/Auc.h

src/Makevars

src/Makevars.win

src/Match.cpp

src/Match.h

src/RcppExports.cpp

src/RcppWrapper.cpp

tests/testthat.R tests/testthat/helper.R tests/testthat/setup.R tests/testthat/test-ResultsDataModel.R tests/testthat/test-adjustedKm.R tests/testthat/test-balance.R tests/testthat/test-eunomia-refit-ps.R tests/testthat/test-eunomia.R tests/testthat/test-fitOutcomeModel.R tests/testthat/test-getDbCohortMethodData.R tests/testthat/test-kmFunctions.R tests/testthat/test-overlapWeights.R tests/testthat/test-parameterSweep.R tests/testthat/test-psFunctions.R tests/testthat/test-ps_subsampling.R tests/testthat/test-runCmAnalyses.R tests/testthat/test-simulation.R tests/testthat/test-studyPopulation.R tests/testthat/test-zero_rows.R

vignettes/.gitignore

vignettes/MultipleAnalyses.Rmd vignettes/SingleStudies.Rmd

vignettes/shinyApp.png

OHDSI/CohortMethod documentation built on Feb. 9, 2024, 9:01 a.m.