Files in OHDSI/ConceptSetDiagnostics
Concept Set Diagnostics
.Rbuildignore
.github/workflows/R_CMD_check_Hades.yaml
.github/workflows/nightly_cleanup_Hades.yml
.gitignore
ConceptSetDiagnostics.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/ConceptSetDiagnostics.R
R/ConvertConceptSetDataFrameToExpression.R
R/ConvertConceptSetExpressionToDataFrame.R
R/ExtractConceptSetsInCohortDefinition.R
R/ExtractConceptSetsInCohortDefinitionSet.R
R/FindConceptSetOccurrence.R
R/FindOrphanConcepts.R
R/FindOrphanConceptsForConceptSetExpression.R
R/GetConceptAncestor.R
R/GetConceptDescendant.R
R/GetConceptIdDetails.R
R/GetConceptPrevalenceCounts.R
R/GetConceptRecordCount.R
R/GetConceptRelationship.R
R/GetConceptSetOccurrenceDate.R
R/GetConceptSynonym.R
R/GetCountOfSourceCodesMappedToStandardConcept.R
R/GetDomain.R
R/GetDrugIngredients.R
R/GetExcludedConceptIdsInConceptSetExpression.R
R/GetMappedSourceConcepts.R
R/GetMappedStandardConcepts.R
R/GetMedraRelationship.R
R/GetRecommendationForConceptSetExpression.R
R/GetRecommendationStandard.R
R/GetRecommendedSource.R
R/GetRelationship.R
R/GetVocabulary.R
R/GetVocabularyVersion.R
R/InstantiateCohortFromConceptSetExpression.R
R/MapMedraToSnomedViaVocabulary.R
R/OptimizeConceptSetExpression.R
R/PerformConceptSetDiagnostics.R
R/PerformStringSearchForConcepts.R
R/Private.R
R/ResolveConceptSetExpression.R
R/ResolveConceptSetsInCohortExpression.R
README.md
compare_versions
deploy.sh
docs/404.html
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ConceptSetDiagnostics-package.html
docs/reference/convertConceptSetDataFrameToExpression.html
docs/reference/convertConceptSetExpressionToDataFrame.html
docs/reference/extractConceptSetsInCohortDefinition.html
docs/reference/extractConceptSetsInCohortDefinitionSet.html
docs/reference/findOrphanConcepts.html
docs/reference/findOrphanConceptsForConceptSetExpression.html
docs/reference/getConceptAncestor.html
docs/reference/getConceptDescendant.html
docs/reference/getConceptDescendants.html
docs/reference/getConceptIdDetails.html
docs/reference/getConceptPrevalenceCounts.html
docs/reference/getConceptPrevalenceCountsForConceptIds.html
docs/reference/getConceptRecordCount.html
docs/reference/getConceptRelationship.html
docs/reference/getConceptSetDetailsFromCohortDefinition.html
docs/reference/getConceptSetExpressionDataFrameFromConceptSetExpression.html
docs/reference/getConceptSetExpressionFromConceptSetExpressionDataFrame.html
docs/reference/getConceptSetSignatureExpression.html
docs/reference/getConceptSynonym.html
docs/reference/getCountOfSourceCodesMappedToStandardConcept.html
docs/reference/getDeepConceptRelationship.html
docs/reference/getDomain.html
docs/reference/getDomainInformation.html
docs/reference/getDrugIngredients.html
docs/reference/getExcludedConceptsInConceptSetExpression.html
docs/reference/getMappedSourceConcepts.html
docs/reference/getMappedStandardConcepts.html
docs/reference/getMedraRelationship.html
docs/reference/getOptimizationRecommendationForConceptSetTable.html
docs/reference/getRecommendationForConceptSetExpression.html
docs/reference/getRecommendedSource.html
docs/reference/getRecommendedStandard.html
docs/reference/getRelationship.html
docs/reference/getStringSearchConcepts.html
docs/reference/getStringSearchConceptsUsingFullText.html
docs/reference/getVocabulary.html
docs/reference/getVocabularyVersion.html
docs/reference/index.html
docs/reference/mapMedraToSnomedViaVocabulary.html
docs/reference/optimizeConceptSetExpression.html
docs/reference/performConceptSetDiagnostics.html
docs/reference/performDesignDiagnosticsOnSearchTerm.html
docs/reference/performStringSearchForConcepts.html
docs/reference/resolveConceptSetExpression.html
docs/reference/resolveConceptSetsInCohortExpression.html
docs/sitemap.xml
extras/ConceptSetDiagnostics.pdf
extras/PackageMaintenance.R
extras/postgres_tsv.sql
inst/cohorts/1.json
inst/cohorts/14906.json
inst/cohorts/CohortDefinitionSet.csv
inst/csv/domains.csv
inst/shiny/ConceptSetDiagnostics/HelperFunctions.R
inst/shiny/ConceptSetDiagnostics/global.R
inst/shiny/ConceptSetDiagnostics/server.R
inst/shiny/ConceptSetDiagnostics/shiny.Rproj
inst/shiny/ConceptSetDiagnostics/ui.R
inst/sql/sql_server/ConvertConceptIdDatesTableToCohort.sql
inst/sql/sql_server/GetConceptSetExpressionOccurrenceDates.sql
inst/sql/sql_server/OptimizeConceptSet.sql
inst/sql/sql_server/OrphanCodes.sql
inst/sql/sql_server/RecommendationSource.sql
inst/sql/sql_server/RecommendedStandard.sql
inst/sql/sql_server/SearchString.sql
inst/sql/sql_server/SearchStringTsv.sql
man-roxygen/CdmDatabaseSchema.R
man-roxygen/CohortDatabaseSchema.R
man-roxygen/CohortDefinitionSet.R
man-roxygen/CohortExpression.R
man-roxygen/ConceptIds.R
man-roxygen/ConceptPrevalenceSchema.R
man-roxygen/ConceptSetExpression.R
man-roxygen/Connection.R
man-roxygen/TempEmulationSchema.R
man-roxygen/UpdateVocabularyFields.R
man-roxygen/VocabularyDatabaseSchema.R
man/ConceptSetDiagnostics-package.Rd
man/convertConceptSetDataFrameToExpression.Rd
man/convertConceptSetExpressionToDataFrame.Rd
man/extractConceptSetsInCohortDefinition.Rd
man/extractConceptSetsInCohortDefinitionSet.Rd
man/findOrphanConcepts.Rd
man/findOrphanConceptsForConceptSetExpression.Rd
man/getConceptAncestor.Rd
man/getConceptDescendant.Rd
man/getConceptIdDetails.Rd
man/getConceptPrevalenceCounts.Rd
man/getConceptRecordCount.Rd
man/getConceptRelationship.Rd
man/getConceptSetOccurrenceDate.Rd
man/getConceptSynonym.Rd
man/getCountOfSourceCodesMappedToStandardConcept.Rd
man/getDomain.Rd
man/getDomainInformation.Rd
man/getDrugIngredients.Rd
man/getExcludedConceptsInConceptSetExpression.Rd
man/getMappedSourceConcepts.Rd
man/getMappedStandardConcepts.Rd
man/getMedraRelationship.Rd
man/getRecommendationForConceptSetExpression.Rd
man/getRecommendedSource.Rd
man/getRecommendedStandard.Rd
man/getRelationship.Rd
man/getVocabulary.Rd
man/getVocabularyVersion.Rd
man/instantiateCohortFromConceptSetExpression.Rd
man/mapMedraToSnomedViaVocabulary.Rd
man/optimizeConceptSetExpression.Rd
man/performConceptSetDiagnostics.Rd
man/performStringSearchForConcepts.Rd
man/resolveConceptSetExpression.Rd
man/resolveConceptSetsInCohortExpression.Rd
tests/testOracle.R
tests/testPostgres.R
tests/testRedshift.R
tests/testSqlServer.R
tests/testthat/helper.R
tests/testthat/setup.R
tests/testthat/test-cohortDefinitions.R
tests/testthat/test-conceptPrevalence.R
tests/testthat/test-conceptSetExpressionFormatConversion.R
tests/testthat/test-orphanConcepts.R
tests/testthat/test-queryConceptTable.R
tests/testthat/test-stringSearch.R
tests/testthat/test-supportingFunctions.R
