getRecommendedSource: given a list of non standard conceptIds, get recommended...
In OHDSI/ConceptSetDiagnostics: Concept Set Diagnostics

getRecommendedSource

R Documentation

given a list of non standard conceptIds, get recommended conceptIds

Description

given a list of non standard conceptIds, get recommended conceptIds

Usage

getRecommendedSource(
  conceptIds,
  vocabularyDatabaseSchema = "vocabulary",
  connection = NULL,
  connectionDetails = NULL,
  conceptPrevalenceSchema = "concept_prevalence",
  tempEmulationSchema = getOption("sqlRenderTempEmulationSchema")
)

Arguments

`conceptIds`	An array of Concept ids.
`vocabularyDatabaseSchema`	The schema name of containing the vocabulary tables.
`connection`	An object of type `connection` as created using the `connect` function in the DatabaseConnector package. Can be left NULL if `connectionDetails` is provided, in which case a new connection will be opened at the start of the function, and closed when the function finishes.
`connectionDetails`	An object of type `connectionDetails` as created using the `createConnectionDetails` function in the DatabaseConnector package. Can be left NULL if `connection` is provided.
`conceptPrevalenceSchema`	The schema name that has the concept prevalence table. The following tables are expected to be present. recommender_set, cp_master, recommended_blacklist.
`tempEmulationSchema`	Some database platforms like Oracle and Impala do not truly support temp tables. To emulate temp tables, provide a schema with write privileges where temp tables can be created.