mapMedraToSnomedViaVocabulary: map MedDRA to SNOMED

In OHDSI/ConceptSetDiagnostics: Concept Set Diagnostics

map MedDRA to SNOMED

Description

given an array of conceptIds belonging to MedDRA vocabulary get its equivalent SNOMED ranked using a combination of OMOP vocabulary mapping, lexical string matching and concept prevalence counts

Usage

mapMedraToSnomedViaVocabulary(
  conceptIds,
  connection = NULL,
  connectionDetails = NULL,
  tempEmulationSchema = getOption("sqlRenderTempEmulationSchema"),
  vocabularyDatabaseSchema = "vocabulary"
)

Arguments

conceptIds	An array of Concept ids.
connection	An object of type connection as created using the connect function in the DatabaseConnector package. Can be left NULL if connectionDetails is provided, in which case a new connection will be opened at the start of the function, and closed when the function finishes.
connectionDetails	An object of type connectionDetails as created using the createConnectionDetails function in the DatabaseConnector package. Can be left NULL if connection is provided.
tempEmulationSchema	Some database platforms like Oracle and Impala do not truly support temp tables. To emulate temp tables, provide a schema with write privileges where temp tables can be created.
vocabularyDatabaseSchema	The schema name of containing the vocabulary tables.

Value

Returns a tibble data frame

OHDSI/ConceptSetDiagnostics documentation built on Feb. 26, 2023, 1:31 a.m.