getCountOfSourceCodesMappedToStandardConcept: Given conceptId(s) get the counts of occurrence with mapping.

In OHDSI/ConceptSetDiagnostics: Concept Set Diagnostics

Given conceptId(s) get the counts of occurrence with mapping.

Description

Given conceptId(s) get the counts of occurrence with mapping.

Usage

getCountOfSourceCodesMappedToStandardConcept(
  conceptIds,
  connection = NULL,
  connectionDetails = NULL,
  cdmDatabaseSchema,
  tempEmulationSchema = getOption("sqlRenderTempEmulationSchema"),
  minCellCount = 0
)

Arguments

conceptIds	An array of Concept ids.
connection	An object of type connection as created using the connect function in the DatabaseConnector package. Can be left NULL if connectionDetails is provided, in which case a new connection will be opened at the start of the function, and closed when the function finishes.
connectionDetails	An object of type connectionDetails as created using the createConnectionDetails function in the DatabaseConnector package. Can be left NULL if connection is provided.
cdmDatabaseSchema	Schema name where your patient-level data in OMOP CDM format resides. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'.
tempEmulationSchema	Some database platforms like Oracle and Impala do not truly support temp tables. To emulate temp tables, provide a schema with write privileges where temp tables can be created.
minCellCount	The minimum cell count for fields containing person/subject count.

Value

Returns a tibble data frame.

OHDSI/ConceptSetDiagnostics documentation built on Feb. 26, 2023, 1:31 a.m.