getRecommendationForConceptSetExpression: Get recommended concepts for a concept set expression.

In OHDSI/ConceptSetDiagnostics: Concept Set Diagnostics

Get recommended concepts for a concept set expression.

Description

Get recommended concepts for a concept set expression.

Usage

getRecommendationForConceptSetExpression(
  conceptSetExpression,
  vocabularyDatabaseSchema = "vocabulary",
  connection = NULL,
  connectionDetails = NULL,
  conceptPrevalenceSchema = "concept_prevalence",
  tempEmulationSchema = getOption("sqlRenderTempEmulationSchema")
)

Arguments

conceptSetExpression	An R-object (list) with expression of the concept set.
vocabularyDatabaseSchema	The schema name of containing the vocabulary tables.
connection	An object of type connection as created using the connect function in the DatabaseConnector package. Can be left NULL if connectionDetails is provided, in which case a new connection will be opened at the start of the function, and closed when the function finishes.
connectionDetails	An object of type connectionDetails as created using the createConnectionDetails function in the DatabaseConnector package. Can be left NULL if connection is provided.
conceptPrevalenceSchema	The schema name that has the concept prevalence table. The following tables are expected to be present. recommender_set, cp_master, recommended_blacklist.
tempEmulationSchema	Some database platforms like Oracle and Impala do not truly support temp tables. To emulate temp tables, provide a schema with write privileges where temp tables can be created.

Value

Returns a tibble data frame.

OHDSI/ConceptSetDiagnostics documentation built on Feb. 26, 2023, 1:31 a.m.