Man pages for OHDSI/ConceptSetDiagnostics
Concept Set Diagnostics

ConceptSetDiagnostics-packageConceptSetDiagnostics: Concept Set Diagnostics
convertConceptSetDataFrameToExpressionConvert concept set expression in a data frame format convert...
convertConceptSetExpressionToDataFrameconvert a concept set expression R list object into a data...
extractConceptSetsInCohortDefinitionExtract concept set expressions from cohort definition...
extractConceptSetsInCohortDefinitionSetExtract concept sets from cohort definition set
findOrphanConceptsGet all the domain id(s) in the vocabulary schema.
findOrphanConceptsForConceptSetExpressionFind orphan concepts for a concept set expression.
getConceptAncestorget concept ancestor
getConceptDescendantget concept descendant
getConceptIdDetailsget concept id details
getConceptPrevalenceCountsget concept id count
getConceptRecordCountGiven conceptId(s) get the record count.
getConceptRelationshipgiven a list of conceptIds, get their relationship
getConceptSetOccurrenceDateGiven a concept set expression, find the occurrence of the...
getConceptSynonymgiven a list of conceptIds, get their synonyms
getCountOfSourceCodesMappedToStandardConceptGiven conceptId(s) get the counts of occurrence with mapping.
getDomainGet all the domain id(s) in the vocabulary schema.
getDomainInformationGet domain information
getDrugIngredientsGet ingredient information
getExcludedConceptsInConceptSetExpressionGiven a concept set expression, get the resolved concepts
getMappedSourceConceptsgiven a list of conceptIds, get their mapped
getMappedStandardConceptsgiven a list of conceptIds, get their mapped
getMedraRelationshipget MedDRA relationship
getRecommendationForConceptSetExpressionGet recommended concepts for a concept set expression.
getRecommendedSourcegiven a list of non standard conceptIds, get recommended...
getRecommendedStandardgiven a list of standard conceptIds, get recommended...
getRelationshipget all relationship id from vocabulary tables in vocabulary...
getVocabularyGet vocabulary id(s) in vocabulary tables in vocabulary...
getVocabularyVersionGet vocabulary version.
instantiateCohortFromConceptSetExpressionGiven a concept set expression, instantiate a cohort.
mapMedraToSnomedViaVocabularymap MedDRA to SNOMED
optimizeConceptSetExpressiongiven a concept set expression, get optimized concept set...
performConceptSetDiagnosticsgiven a search string (s) perform concept set diagnostics
performStringSearchForConceptsGet concepts that match a string search
resolveConceptSetExpressionGiven a concept set expression, get the resolved concepts
resolveConceptSetsInCohortExpressionGiven a cohort definition expression, get the resolved...
OHDSI/ConceptSetDiagnostics documentation built on Feb. 26, 2023, 1:31 a.m.