Files in OHDSI/ETL-Synthea
A Builder for Converting the Synthea Data to the OMOP CDM
.Rbuildignore
.github/workflows/check.yaml
.github/workflows/lintr.yaml
.gitignore
.lintr
DESCRIPTION
ETLSyntheaBuilder.Rproj
NAMESPACE
R/CreateCDMIndexAndConstraintScripts.r
R/CreateCDMIndices.r
R/CreateCDMTables.r
R/CreateMapAndRollupTables.r
R/CreateSyntheaTables.r
R/CreateVisitRollupTables.r
R/CreateVocabMapTables.r
R/DropEventTables.r
R/DropMapAndRollupTables.R
R/DropSyntheaTables.r
R/DropVocabTables.r
R/ETLSyntheaBuilder.R
R/LoadEventTables.r
R/LoadSyntheaTables.r
R/LoadVocabFromCsv.r
R/LoadVocabFromSchema.r
R/TruncateEventTables.r
R/TruncateVocabTables.r
R/backupCDM.r
R/createExtraIndices.R
R/createPrunedTables.r
R/exportToSQLite.r
R/getEventConceptId.r
R/pruneCDM.r
R/restoreCDMTables.r
README.md
_pkgdown.yml
docs/404.html
docs/articles/care_site.html
docs/articles/condition_occurrence.html
docs/articles/cost.html
docs/articles/death.html
docs/articles/device_exposure.html
docs/articles/drug_exposure.html
docs/articles/index.html
docs/articles/location.html
docs/articles/measurement.html
docs/articles/observation.html
docs/articles/observation_period.html
docs/articles/payer_plan_period.html
docs/articles/person.html
docs/articles/procedure_occurrence.html
docs/articles/provider.html
docs/articles/visit_detail.html
docs/articles/visit_occurrence.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/condition_occurrence.html
docs/docsearch.css
docs/docsearch.js
docs/drug_exposure.html
docs/index.html
docs/link.svg
docs/measurement.html
docs/observation.html
docs/observation_period.html
docs/person.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/procedure_occurrence.html
docs/readme.html
docs/reference/CreateCDMIndexAndConstraintScripts.html
docs/reference/CreateCDMIndices.html
docs/reference/CreateCDMTables.html
docs/reference/CreateMapAndRollupTables.html
docs/reference/CreateSyntheaTables.html
docs/reference/CreateVisitRollupTables.html
docs/reference/CreateVocabMapTables.html
docs/reference/DropEventTables.html
docs/reference/DropMapAndRollupTables.html
docs/reference/DropSyntheaTables.html
docs/reference/DropVocabTables.html
docs/reference/ETLSyntheaBuilder-package.html
docs/reference/LoadEventTables.html
docs/reference/LoadSyntheaTables.html
docs/reference/LoadVocabFromCsv.html
docs/reference/LoadVocabFromSchema.html
docs/reference/TruncateEventTables.html
docs/reference/TruncateVocabTables.html
docs/reference/backupCDM.html
docs/reference/createExtraIndices.html
docs/reference/createPrunedTables.html
docs/reference/exportToSQLite.html
docs/reference/getEventConceptId.html
docs/reference/index.html
docs/reference/pruneCDM.html
docs/reference/restoreCDMTables.html
docs/sitemap.xml
docs/visit_occurrence.html
extras/ConditionTests.r
extras/FilterVocabulary.R
extras/ObservationPeriodTests.r
extras/PackageMaintenance.R
extras/PersonTests.r
extras/RunSyntheaTestCases.r
extras/SampleCompleteProcess.R
extras/SupportFunctions.r
extras/SyntheaTestFramework.r
extras/VisitTests.r
extras/WindowsLoader.r
extras/codeToRun.R
extras/insert.sql
extras/test.sql
inst/sql/sql_server/cdm_version/v531/AAVITable.sql
inst/sql/sql_server/cdm_version/v531/AllVisitTable.sql
inst/sql/sql_server/cdm_version/v531/backup_cdm.sql
inst/sql/sql_server/cdm_version/v531/create_source_to_source_vocab_map.sql
inst/sql/sql_server/cdm_version/v531/create_source_to_standard_vocab_map.sql
inst/sql/sql_server/cdm_version/v531/create_states_map.sql
inst/sql/sql_server/cdm_version/v531/final_visit_ids.sql
inst/sql/sql_server/cdm_version/v531/get_event_concept_id.sql
inst/sql/sql_server/cdm_version/v531/insert_care_site.sql
inst/sql/sql_server/cdm_version/v531/insert_cdm_source.sql
inst/sql/sql_server/cdm_version/v531/insert_condition_era.sql
inst/sql/sql_server/cdm_version/v531/insert_condition_occurrence.sql
inst/sql/sql_server/cdm_version/v531/insert_cost_v270.sql
inst/sql/sql_server/cdm_version/v531/insert_cost_v300.sql
inst/sql/sql_server/cdm_version/v531/insert_death.sql
inst/sql/sql_server/cdm_version/v531/insert_device_exposure.sql
inst/sql/sql_server/cdm_version/v531/insert_drug_era.sql
inst/sql/sql_server/cdm_version/v531/insert_drug_exposure.sql
inst/sql/sql_server/cdm_version/v531/insert_location.sql
inst/sql/sql_server/cdm_version/v531/insert_measurement.sql
inst/sql/sql_server/cdm_version/v531/insert_observation.sql
inst/sql/sql_server/cdm_version/v531/insert_observation_period.sql
inst/sql/sql_server/cdm_version/v531/insert_payer_plan_period.sql
inst/sql/sql_server/cdm_version/v531/insert_person.sql
inst/sql/sql_server/cdm_version/v531/insert_procedure_occurrence.sql
inst/sql/sql_server/cdm_version/v531/insert_provider.sql
inst/sql/sql_server/cdm_version/v531/insert_visit_detail.sql
inst/sql/sql_server/cdm_version/v531/insert_visit_occurrence.sql
inst/sql/sql_server/cdm_version/v531/restore_cdm_tables.sql
inst/sql/sql_server/cdm_version/v540/AAVITable.sql
inst/sql/sql_server/cdm_version/v540/AllVisitTable.sql
inst/sql/sql_server/cdm_version/v540/backup_cdm.sql
inst/sql/sql_server/cdm_version/v540/create_source_to_source_vocab_map.sql
inst/sql/sql_server/cdm_version/v540/create_source_to_standard_vocab_map.sql
inst/sql/sql_server/cdm_version/v540/create_states_map.sql
inst/sql/sql_server/cdm_version/v540/final_visit_ids.sql
inst/sql/sql_server/cdm_version/v540/get_event_concept_id.sql
inst/sql/sql_server/cdm_version/v540/insert_care_site.sql
inst/sql/sql_server/cdm_version/v540/insert_cdm_source.sql
inst/sql/sql_server/cdm_version/v540/insert_condition_era.sql
inst/sql/sql_server/cdm_version/v540/insert_condition_occurrence.sql
inst/sql/sql_server/cdm_version/v540/insert_cost_v270.sql
inst/sql/sql_server/cdm_version/v540/insert_cost_v300.sql
inst/sql/sql_server/cdm_version/v540/insert_death.sql
inst/sql/sql_server/cdm_version/v540/insert_device_exposure.sql
inst/sql/sql_server/cdm_version/v540/insert_drug_era.sql
inst/sql/sql_server/cdm_version/v540/insert_drug_exposure.sql
inst/sql/sql_server/cdm_version/v540/insert_location.sql
inst/sql/sql_server/cdm_version/v540/insert_measurement.sql
inst/sql/sql_server/cdm_version/v540/insert_observation.sql
inst/sql/sql_server/cdm_version/v540/insert_observation_period.sql
inst/sql/sql_server/cdm_version/v540/insert_payer_plan_period.sql
inst/sql/sql_server/cdm_version/v540/insert_person.sql
inst/sql/sql_server/cdm_version/v540/insert_procedure_occurrence.sql
inst/sql/sql_server/cdm_version/v540/insert_provider.sql
inst/sql/sql_server/cdm_version/v540/insert_visit_detail.sql
inst/sql/sql_server/cdm_version/v540/insert_visit_occurrence.sql
inst/sql/sql_server/cdm_version/v540/restore_cdm_tables.sql
inst/sql/sql_server/extra_indices.sql
inst/sql/sql_server/synthea_version/v270/create_synthea_tables.sql
inst/sql/sql_server/synthea_version/v300/create_synthea_tables.sql
inst/sql/sql_server/synthea_version/v310/create_synthea_tables.sql
inst/sql/sql_server/synthea_version/v320/create_synthea_tables.sql
inst/sql/sql_server/synthea_version/v330/create_synthea_tables.sql
inst/sqlite/cdm.sqlite.gz
man/CreateCDMIndexAndConstraintScripts.Rd
man/CreateCDMIndices.Rd
man/CreateCDMTables.Rd
man/CreateMapAndRollupTables.Rd
man/CreateSyntheaTables.Rd
man/CreateVisitRollupTables.Rd
man/CreateVocabMapTables.Rd
man/DropEventTables.Rd
man/DropMapAndRollupTables.Rd
man/DropSyntheaTables.Rd
man/DropVocabTables.Rd
man/ETLSyntheaBuilder-package.Rd
man/LoadEventTables.Rd
man/LoadSyntheaTables.Rd
man/LoadVocabFromCsv.Rd
man/LoadVocabFromSchema.Rd
man/TruncateEventTables.Rd
man/TruncateVocabTables.Rd
man/backupCDM.Rd
man/createExtraIndices.Rd
man/createPrunedTables.Rd
man/exportToSQLite.Rd
man/getEventConceptId.Rd
man/pruneCDM.Rd
man/restoreCDMTables.Rd
tests/testthat.R
tests/testthat/test-simple_test.R
vignettes/.gitignore
vignettes/care_site.Rmd
vignettes/condition_occurrence.Rmd
vignettes/cost.Rmd
vignettes/death.Rmd
vignettes/device_exposure.Rmd
vignettes/drug_exposure.Rmd
vignettes/index.md
vignettes/location.Rmd
vignettes/measurement.Rmd
vignettes/observation.Rmd
vignettes/observation_period.Rmd
vignettes/payer_plan_period.Rmd
vignettes/person.Rmd
vignettes/procedure_occurrence.Rmd
vignettes/provider.Rmd
vignettes/visit_detail.Rmd
vignettes/visit_occurrence.Rmd
