In OHDSI/ETL-Synthea: A Builder for Converting the Synthea Data to the OMOP CDM
Observation_period
Reading from Synthea table encounters.csv
| Destination Field | Source field | Logic | Comment field |
| --- | --- | --- | --- |
| observation_period_id | | Autogenerated | |
| person_id | patient | Map by mapping person.person_source_value to patient. Find person.person_id by mapping encouters.patient to person.person_source_value. | |
| observation_period_start_date | start | min(start) group by patient Take the earliest START per patient | |
| observation_period_end_date | stop | max(stop) group by patient Take the latest STOP per patient | |
| period_type_concept_id | | Set as concept 32882 (Standard algorithm from EHR) for all records | |
OHDSI/ETL-Synthea documentation built on Feb. 24, 2025, 3:48 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Observation_period
Reading from Synthea table encounters.csv
| Destination Field | Source field | Logic | Comment field | | --- | --- | --- | --- | | observation_period_id | | Autogenerated | | | person_id | patient | Map by mapping person.person_source_value to patient. Find person.person_id by mapping encouters.patient to person.person_source_value. | | | observation_period_start_date | start | min(start) group by patient Take the earliest START per patient | | | observation_period_end_date | stop | max(stop) group by patient Take the latest STOP per patient | | | period_type_concept_id | | Set as concept 32882 (Standard algorithm from EHR) for all records | |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.