Files in OHDSI/EmpiricalCalibration

Routines for Performing Empirical Calibration of Observational Study Estimates

.Rbuildignore

.github/pull_request_template.md

.github/workflows/R_CMD_check_Hades.yml

.github/workflows/R_CMD_check_main_weekly.yaml

.gitignore

CRAN-SUBMISSION

DESCRIPTION

EmpiricalCalibration.Rproj

NAMESPACE

NEWS.md R/ConfidenceIntervalCalibration.R R/Data.R R/EmpiricalCalibration.R R/EmpiricalCalibrationUsingAsymptotics.R R/EmpiricalCalibrationUsingMcmc.R R/Evaluation.R R/ExpectedSystematicError.R R/Likelihoods.R R/LlrCalibration.R R/MaxSprtCriticalValues.R R/Plots.R R/RcppExports.R R/Simulation.R README.md

_pkgdown.yml

compare_versions

cran-comments.md

data/caseControl.rda

data/cohortMethod.rda

data/grahamReplication.rda

data/sccs.rda

data/southworthReplication.rda

deploy.sh

docs/404.html

docs/articles/EmpiricalCiCalibrationVignette.html

docs/articles/EmpiricalCiCalibrationVignette_files/accessible-code-block-0.0.1/empty-anchor.js

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docs/articles/EmpiricalCiCalibrationVignette_files/header-attrs-2.10/header-attrs.js

docs/articles/EmpiricalMaxSprtCalibrationVignette.html

docs/articles/EmpiricalMaxSprtCalibrationVignette_files/figure-html/unnamed-chunk-10-1.png

docs/articles/EmpiricalMaxSprtCalibrationVignette_files/header-attrs-2.10/header-attrs.js

docs/articles/EmpiricalPCalibrationVignette.html

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docs/articles/EmpiricalPCalibrationVignette_files/header-attrs-2.10/header-attrs.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/pull_request_template.html

docs/reference/EmpiricalCalibration-package.html

docs/reference/EmpiricalCalibration.html

docs/reference/Rplot001.png

docs/reference/calibrateConfidenceInterval.html

docs/reference/calibrateLlr.html

docs/reference/calibrateP.html

docs/reference/caseControl.html

docs/reference/cohortMethod.html

docs/reference/compareEase.html

docs/reference/computeCvBinomial.html

docs/reference/computeCvPoisson.html

docs/reference/computeCvPoissonRegression.html

docs/reference/computeExpectedAbsoluteSystematicError.html

docs/reference/computeExpectedSystematicError.html

docs/reference/computeTraditionalCi.html

docs/reference/computeTraditionalP.html

docs/reference/convertNullToErrorModel.html

docs/reference/evaluateCiCalibration.html

docs/reference/fitMcmcNull.html

docs/reference/fitNull.html

docs/reference/fitNullNonNormalLl.html

docs/reference/fitSystematicErrorModel.html

docs/reference/grahamReplication.html

docs/reference/index.html

docs/reference/plotCalibration-1.png

docs/reference/plotCalibration.html

docs/reference/plotCalibrationEffect-1.png

docs/reference/plotCalibrationEffect.html

docs/reference/plotCiCalibration.html

docs/reference/plotCiCalibrationEffect-1.png

docs/reference/plotCiCalibrationEffect.html

docs/reference/plotCiCoverage.html

docs/reference/plotErrorModel-1.png

docs/reference/plotErrorModel.html

docs/reference/plotExpectedType1Error-1.png

docs/reference/plotExpectedType1Error.html

docs/reference/plotForest-1.png

docs/reference/plotForest.html

docs/reference/plotMcmcTrace.html

docs/reference/plotTrueAndObserved-1.png

docs/reference/plotTrueAndObserved.html

docs/reference/sccs.html

docs/reference/simulateControls-1.png

docs/reference/simulateControls.html

docs/reference/simulateMaxSprtData.html

docs/reference/southworthReplication.html

docs/sitemap.xml

extras/CodeForCiCaliPaper.R extras/EmpiricalCalibration.pdf extras/InvestigateBiasSimilarity.R extras/InvestigateCorrespondanceCiAndP.R extras/InvestigateIndefiniteMaxSprt.R extras/InvestigateLlrCalibration.R extras/InvestigateMultiAnalysesSynthesis.R extras/InvestigateTestForCorrelatedEase.R extras/InvestigateTwoSidedMaxSprt.R extras/InvestigatingSingleBiasMetric.R extras/NonNormalNegativeControlLikelihood.R extras/PackageMaintenance.R extras/SimulateMaxSprtData.R extras/Simulation.R extras/TempDataFetch.R extras/TestCalibratedMaxSprt.R

extras/plot.png

inst/CITATION

inst/doc/EmpiricalCiCalibrationVignette.pdf inst/doc/EmpiricalMaxSprtCalibrationVignette.pdf inst/doc/EmpiricalPCalibrationVignette.pdf man/EmpiricalCalibration-package.Rd man/calibrateConfidenceInterval.Rd man/calibrateLlr.Rd man/calibrateP.Rd man/caseControl.Rd man/cohortMethod.Rd man/compareEase.Rd man/computeCvBinomial.Rd man/computeCvPoisson.Rd man/computeCvPoissonRegression.Rd man/computeExpectedAbsoluteSystematicError.Rd man/computeTraditionalCi.Rd man/computeTraditionalP.Rd man/convertNullToErrorModel.Rd man/evaluateCiCalibration.Rd man/fitMcmcNull.Rd man/fitNull.Rd man/fitNullNonNormalLl.Rd man/fitSystematicErrorModel.Rd man/grahamReplication.Rd man/plotCalibration.Rd man/plotCalibrationEffect.Rd man/plotCiCalibration.Rd man/plotCiCalibrationEffect.Rd man/plotCiCoverage.Rd man/plotErrorModel.Rd man/plotExpectedType1Error.Rd man/plotForest.Rd man/plotMcmcTrace.Rd man/plotTrueAndObserved.Rd man/sccs.Rd man/simulateControls.Rd man/simulateMaxSprtData.Rd man/southworthReplication.Rd

src/RcppExports.cpp

src/RcppWrapper.cpp

tests/testthat.R tests/testthat/test-EmpiricalCalibrationUsingAsymptotics.R tests/testthat/test-LlrCalibration.R tests/testthat/test-asymptoticNull.R tests/testthat/test-confidenceIntervalCalibration.R tests/testthat/test-critical-values.R tests/testthat/test-empiricalCalibrationUsingMcmc.R tests/testthat/test-evaluation.R tests/testthat/test-expected-systematic-error.R tests/testthat/test-likelihoods.R tests/testthat/test-plots.R tests/testthat/test-simulation.R vignettes/EmpiricalCiCalibrationVignette.Rmd vignettes/EmpiricalMaxSprtCalibrationVignette.Rmd vignettes/EmpiricalPCalibrationVignette.Rmd

vignettes/allCvsAndLlrs.rds

OHDSI/EmpiricalCalibration documentation built on Jan. 31, 2024, 7:29 p.m.