plotMcmcTrace: Plot the MCMC trace

In OHDSI/EmpiricalCalibration: Routines for Performing Empirical Calibration of Observational Study Estimates

Plot the MCMC trace

Description

Plot the MCMC trace

Usage

plotMcmcTrace(mcmcNull, fileName = NULL)

Arguments

mcmcNull	An object of type mcmcNull as generated using the fitMcmcNull function.
fileName	Name of the file where the plot should be saved, for example 'plot.png'. See the function ggsave in the ggplot2 package for supported file formats.

Details

Plot the trace of the MCMC for diagnostics purposes.

Examples

## Not run: 
data(sccs)
negatives <- sccs[sccs$groundTruth == 0, ]
null <- fitMcmcNull(negatives$logRr, negatives$seLogRr)
plotMcmcTrace(null)

## End(Not run)

OHDSI/EmpiricalCalibration documentation built on Jan. 31, 2024, 7:29 p.m.