viewDatabaseResultPlp: open a local shiny app for viewing the result of a PLP...

In OHDSI/PatientLevelPrediction: Develop Clinical Prediction Models Using the Common Data Model

open a local shiny app for viewing the result of a PLP analyses from a database

Description

open a local shiny app for viewing the result of a PLP analyses from a database

Usage

viewDatabaseResultPlp(
  mySchema,
  myServer,
  myUser,
  myPassword,
  myDbms,
  myPort = NULL,
  myTableAppend
)

Arguments

mySchema	Database result schema containing the result tables
myServer	server with the result database
myUser	Username for the connection to the result database
myPassword	Password for the connection to the result database
myDbms	database management system for the result database
myPort	Port for the connection to the result database
myTableAppend	A string appended to the results tables (optional)

Details

Opens a shiny app for viewing the results of the models from a database

Value

Opens a shiny app for interactively viewing the results

Examples

  
connectionDetails <- Eunomia::getEunomiaConnectionDetails()
Eunomia::createCohorts(connectionDetails)
databaseDetails <- createDatabaseDetails(connectionDetails = connectionDetails,
                                          cdmDatabaseSchema = "main",
                                          cdmDatabaseName = "Eunomia",
                                          cdmDatabaseId = "1",
                                          targetId = 1,
                                          outcomeIds = 3)
modelDesign <- createModelDesign(targetId = 1,
                                 outcomeId = 3,
                                 modelSettings = setLassoLogisticRegression())
saveLoc <- file.path(tempdir(), "viewDatabaseResultPlp", "developement")
runMultiplePlp(databaseDetails = databaseDetails, modelDesignList = list(modelDesign),
               saveDirectory = saveLoc)
# view result files
dir(saveLoc, recursive = TRUE)
viewDatabaseResultPlp(myDbms = "sqlite", 
                      mySchema = "main", 
                      myServer = file.path(saveLoc, "sqlite", "databaseFile.sqlite"),
                      myUser = NULL,
                      myPassword = NULL,
                      myTableAppend = "")
# clean up, shiny app can't be opened after the following has been run
unlink(saveLoc, recursive = TRUE)

OHDSI/PatientLevelPrediction documentation built on Feb. 14, 2025, 9:44 a.m.