viewMultiplePlp: open a local shiny app for viewing the result of a multiple...

In OHDSI/PatientLevelPrediction: Develop Clinical Prediction Models Using the Common Data Model

open a local shiny app for viewing the result of a multiple PLP analyses

Description

open a local shiny app for viewing the result of a multiple PLP analyses

Usage

viewMultiplePlp(analysesLocation)

Arguments

analysesLocation

The directory containing the results (with the analysis_x folders)

Details

Opens a shiny app for viewing the results of the models from various T,O, Tar and settings settings.

Value

Opens a shiny app for interactively viewing the results

Examples

 
connectionDetails <- Eunomia::getEunomiaConnectionDetails()
Eunomia::createCohorts(connectionDetails)
databaseDetails <- createDatabaseDetails(connectionDetails = connectionDetails,
                                          cdmDatabaseSchema = "main",
                                          cdmDatabaseName = "Eunomia",
                                          cdmDatabaseId = "1",
                                          targetId = 1,
                                          outcomeIds = 3)
modelDesign <- createModelDesign(targetId = 1, 
                                 outcomeId = 3, 
                                 modelSettings = setLassoLogisticRegression())
saveLoc <- file.path(tempdir(), "viewMultiplePlp", "development")
runMultiplePlp(databaseDetails = databaseDetails, modelDesignList = list(modelDesign),
               saveDirectory = saveLoc)
# view result files
dir(saveLoc, recursive = TRUE)
# open shiny app
viewMultiplePlp(analysesLocation = saveLoc)
# clean up, shiny app can't be opened after the following has been run
unlink(saveLoc, recursive = TRUE)

OHDSI/PatientLevelPrediction documentation built on Feb. 14, 2025, 9:44 a.m.