describe_node: Targets and regulators of a gene in a network

In OceaneCsn/DIANE: DIANE

Targets and regulators of a gene in a network

Description

Targets and regulators of a gene in a network

Usage

describe_node(graph, node)

Arguments

graph	igraph object
node	gene to describe

Value

list with targets and regulators attributes

Examples

data("abiotic_stresses")
data("regulators_per_organism") 
mat <- abiotic_stresses$heat_DEGs_regulatory_links
network <- DIANE::network_thresholding(mat, n_edges = 600)
data <- network_data(network, regulators_per_organism[["Arabidopsis thaliana"]])
nodes <- data$nodes[order(-data$nodes$degree),]
gene_of_interest <- nodes$id[1] 
DIANE::describe_node(network, node =gene_of_interest)

OceaneCsn/DIANE documentation built on Jan. 10, 2024, 6:43 p.m.