draw_discarded_edges: Draw network with removed edges in red

In OceaneCsn/DIANE: DIANE

Draw network with removed edges in red

Description

Draw network with removed edges in red

Usage

draw_discarded_edges(links, net_data)

Arguments

links	dataframe of edges containing their adjusted pvalues, as returned by the test_edges function
net_data	network data of the thresholded network, given by DIANE::network_data()

Examples

data(abiotic_stresses)
links <- abiotic_stresses$heat_edge_tests$links
net <- network_from_tests(links, fdr = 0.01)
net_data <- network_data(net, 
gene_info = gene_annotations$`Arabidopsis thaliana`, 
regulators = regulators_per_organism$`Arabidopsis thaliana`)
draw_discarded_edges(links, net_data)

OceaneCsn/DIANE documentation built on Jan. 10, 2024, 6:43 p.m.