addOutputInterval | Adds an interval to the output schema of the simulation |
addOutputs | Adds the quantities as output into the 'simulation'. The... |
addUserDefinedPKParameter | Adds and returns a User-Defined PK-Parameter to the managed... |
AgingData | AgingData |
allAvailableDimensions | List all available dimensions in the 'OSPSuite' platform |
AllMatchingMethod | Names of the '.NET' container tasks of the type... |
AllPathsInMethod | Names of the '.NET' container tasks of the type... |
allPKParameterNames | Returns the name of all pk parameters defined in the system |
ApiConfig | ApiConfig |
Application | Application |
Cache | Cache |
calculatePKAnalyses | Calculates the pkAnalyses for all output values available in... |
calculateResiduals | Calculate residuals for datasets in 'DataCombined' |
clearMemory | Clears the memory used by all underlying objects |
clearOutputIntervals | Removes all intervals as well as all single time points from... |
clearOutputs | Removes all selected output from the given 'simulation' |
CompareBy | How should comparison of entities be performed |
Container | Container |
convertSnapshot | Convert between snapshot and project formats |
convertUnits | Convert datasets in 'DataCombined' to common units |
createDistributions | Creates the parameter distributions based on the given... |
createImporterConfigurationForFile | Create a 'DataImporterConfiguration' for an XLS sheet |
createIndividual | Creates an individual using the PK-Sim Database |
createIndividualCharacteristics | Creates an individual using the PK-Sim Database. |
createPopulation | Creates an population using the PK-Sim Database |
createPopulationCharacteristics | Creates the population characteristics used to create a... |
createSimulationBatch | Creates and returns an instance of a 'SimulationBatch' that... |
DataAggregationMethods | Names of aggregation available for... |
DataColumn | DataColumn |
DataCombined | Object combining simulated and observed data |
DataErrorType | Supported types of the error |
DataImporterConfiguration | DataImporterConfiguration |
DataRepository | DataRepository |
DataSet | DataSet |
dataSetToDataFrame | Converts a list of 'DataSet' objects to a data.frame |
DefaultPlotConfiguration | Plot configuration for OSP plots |
dot-addMissingGroupings | Replace missing groupings with dataset names |
dot-cleanVectorArgs | Validate arguments provided as vectors |
dot-convertGeneralToSpecificPlotConfiguration | Create plot-specific 'tlf::PlotConfiguration' object |
dot-createAxesLabels | Create axes labels |
dot-encodeUnit | Encoding mu symbol |
dot-expandPath | Returns the expanded path for 'path' and ensure that encoding... |
dot-extractAggregatedSimulatedData | Extract aggregated simulated data |
dot-extractMostFrequentUnit | Find the most common units |
dot-extractResidualsToTibble | Created observed versus simulated paired data |
dot-gatherFiles | Gather files and files from folders to one location |
dot-geoRange | Geometric Range |
dot-getAllEntitiesMatching | Retrieve all entities of a container (simulation or container... |
dot-getAllEntityPathsIn | Retrieves all path of entities defined within the container... |
dot-getConcurrentSimulationRunnerResults | Get SimulationResults from ConcurrentSimulationRunner |
dot-getDimensionsEnum | Function to return an enum of all available dimensions |
dot-getEntity | Retrieve a single entity by path in the given container |
dot-getNetTask | .getNetTask |
dot-getNetTaskFromCache | .getNetTaskFromCache |
dot-getOspDimensions | get OSP Dimensions from OSPSuite.Dimensions.xml data |
dot-getOspUnits | get OSP Units from OSPSuite.Dimensions.xml data |
dot-getParentContainerByType | Get the parent container of a specific type for a given... |
dot-getPropertyValue | Returns the value of property named 'propertyName' from .NET... |
dot-getPropertyValues | Returns a list containing all properties 'propertyName' from... |
dot-getQuantityDisplayPaths | Retrieves the display path of the quantity defined by path in... |
dot-getUnitsEnum | Create a list of all units available for each dimension |
dot-ImporterErrorTypeToDataSetErrorType | Mapping of string representation for the error types... |
dot-initPackage | Load the OSPSuite R to .NET Binding |
dot-loadDataRepositoryFromPKML | Loads a data repository (typically observed data) from a PKML... |
dot-makeDataFrameColumn | Create a vector of the right length for a certain property of... |
dot-netEnumName | Retrieves the name of the constant in the specified... |
DotNetWrapper | Wrapper class for '.NET' objects |
dot-normRange | Normal Range |
dot-parameterValueListFrom | Converts a list of .NET 'ParameterValue' into a list with 2... |
dot-parseDimensionsXML | parse OSPSuite.Dimensions.xml containing dimensions and units |
dot-removeEmptyDataFrame | Remove empty data frames from a list of data frames |
dot-removeUnpairableDatasets | Remove unpairable datasets for computing residuals |
dot-savePKAnalysesToCSV | Saves the pK-analyses to csv file |
dot-savePopulationToCSV | Saves the population to csv file |
dot-saveResultsToCSV | Saves the simulation results to csv file |
dot-saveSensitivityAnalysisResultsToCSV | Saves the simulation analysis results to csv file |
dot-scaleQuantityValues | Scale current values of quantities using a factor |
dot-setEndSimulationTime | Set end time of the simulation |
dot-setQuantityValues | Set values of quantity |
dot-toObjectType | Convert '.NET' object to wrapper class in R |
dot-unitConverter | Convert a data frame to common units |
dot-validateHasUnit | Check if quantity can be represented in the unit |
dot-validateScalarDataCombined | Validate that single instance of 'DataCombined' |
Entity | Entity |
exportIndividualSimulations | Export simulation PKMLs for given 'individualIds'. Each pkml... |
exportPKAnalysesToCSV | Saves the pK-analyses to csv file |
exportPopulationToCSV | Saves the population to csv file |
exportResultsToCSV | Saves the simulation results to csv file |
exportSensitivityAnalysisResultsToCSV | Saves the simulation analysis results to csv file |
exportSteadyStateToXLS | Export steady-state to Excel in the format that can be... |
Formula | Formula |
Gender | Default genders defined in PK-Sim |
getAllContainerPathsIn | Retrieves the path of all containers defined in the container... |
getAllContainersMatching | Retrieve all sub containers of a parent container (simulation... |
getAllMoleculePathsIn | Retrieves the paths of all molecules defined in the container... |
getAllMoleculesMatching | Retrieve all molecules of a container (simulation or... |
getAllObserverPathsIn | Retrieves the path of all observers defined in the container... |
getAllParameterPathsIn | Retrieves the path of all parameters defined in the container... |
getAllParametersForSensitivityAnalysisMatching | Retrieve all parameters of the given simulation matching the... |
getAllParametersMatching | Retrieve all parameters of a container (simulation or... |
getAllQuantitiesMatching | Retrieve all quantities of a container (simulation or... |
getAllQuantityPathsIn | Retrieves the path of all quantities defined in the container... |
getAllStateVariableParametersPaths | Get the paths of all state variable parameters of the... |
getAllStateVariablesPaths | Get the paths of all state variable quantities of the... |
getBaseUnit | Get base unit of a dimension |
getContainer | Retrieve a single container by path under the given container |
getDimensionByName | Get dimension by name |
getDimensionForUnit | Get dimension for a given unit |
getMolecule | Retrieve a single molecule by path in the given container |
getMolWeightFor | Retrieve molecular weight for a quantity's molecule |
getOSPSuiteSetting | Get the value of a global ospsuite-R setting. |
getOutputValues | Extracting simulated values |
getParameter | Retrieve a single parameter by path in the given container |
getParameterDisplayPaths | Retrieves the display path of the parameters defined by paths... |
getQuantity | Retrieve a single quantity by path in the given container |
getQuantityValuesByPath | Get the values of quantities in the simulation by path |
getSimulationTree | Get simulation tree |
getStandardMoleculeParameters | Returns a list containing all standard global parameters... |
getSteadyState | Get the steady-state values of species and state variable... |
getUnitsForDimension | Get units for a given dimension |
hasDimension | Dimension existence |
hasUnit | Unit existence |
HumanPopulation | Default human population defined in PK-Sim |
importPKAnalysesFromCSV | Loads the pK-analyses from csv file |
importResultsFromCSV | Imports the simulation results from one or more csv files |
importSensitivityAnalysisResultsFromCSV | Imports the simulation analysis results from one or more csv... |
IndividualCharacteristics | IndividualCharacteristics |
initPKSim | Loads the 'PKSim.R' dll that will enable create individual... |
Interval | Interval |
isExplicitFormulaByPath | Is the value defined by an explicit formula |
loadAgingDataFromCSV | Loads aging data (typically generated from PK-Sim) i |
loadDataImporterConfiguration | Load 'DataImporterConfiguration' from XML file. |
loadDataSetFromPKML | Loads data (typically observed data) from a PKML file and... |
loadDataSetsFromExcel | Load data sets from excel |
loadPopulation | Loads a population from a csv file and returns the... |
loadSimulation | Load a simulation from a pkml file |
messages | List of functions and strings used to signal error messages... |
Molecule | Molecule |
MoleculeOntogeny | MoleculeOntogeny |
MoleculeParameter | Standard molecule parameter names typically available in an... |
ObjectBase | ObjectBase |
ospDimensions | Supported dimensions defined as a named list |
ospsuite_deprecated | Deprecated functions |
ospsuiteSettingNames | Names of the settings stored in ospsuiteEnv. Can be used with... |
ospUnits | Supported units defined as a named list of lists |
OutputSchema | OutputSchema |
OutputSelections | OutputSelections |
Parameter | Parameter |
ParameterRange | ParameterRange |
pkAnalysesToDataFrame | Convert the pk-Analysis to data frame |
PKParameter | PKParameter |
pkParameterByName | Returns an instance of a PK-Parameter by name or NULL if the... |
PKParameterSensitivity | PKParameterSensitivity |
plotIndividualTimeProfile | Time-profile plot of individual data |
plotObservedVsSimulated | Observed versus predicted/simulated scatter plot |
plotPopulationTimeProfile | Time-values profile plot for population simulations |
plotResidualsVsSimulated | Residuals versus time scatter plot |
plotResidualsVsTime | Residuals versus time scatter plot |
Population | Population |
PopulationCharacteristics | PopulationCharacteristics |
populationToDataFrame | Creates a data.frame containing one column for each parameter... |
potentialVariableParameterPathsFor | Returns an array of parameter path with one entry for each... |
Quantity | Quantity |
QuantityPKParameter | QuantityPKParameter |
QuantitySelection | QuantitySelection |
reexports | Objects exported from other packages |
removeAllUserDefinedPKParameters | Removes all User-Defined PK-Parameters that may have been... |
removeSimulationFromCache | Removes a simulation from simulations cache. |
resetSimulationCache | Clears cache of loaded simulations |
runSensitivityAnalysis | Runs a sensitivity analysis |
runSimulation | Run a single simulation |
runSimulationBatches | Run simulation batches |
runSimulations | Runs multiple simulations concurrently. |
runSimulationsFromSnapshot | Run Simulations From Snapshot Files |
saveDataSetToPKML | Save the 'DataSet' to pkml |
saveSimulation | Saves a simulation to pkml file |
scaleParameterValues | Scale current values of parameters using a factor |
SensitivityAnalysis | SensitivityAnalysis |
SensitivityAnalysisResults | SensitivityAnalysisResults |
SensitivityAnalysisRunOptions | SensitivityAnalysisRunOptions |
setMoleculeInitialValues | Set molecule start values |
setMoleculeScaleDivisors | Set molecule scale divisors |
setMoleculeValuesByPath | Set molecule start values in the simulation by path |
setOutputInterval | Clears the output interval from the simulation and adds a new... |
setOutputs | Set outputs |
setParameterValues | Set values of parameters |
setParameterValuesByPath | Set the values of parameters in the simulation by path |
setQuantityValuesByPath | Set the values of quantities in the simulation by path |
Simulation | Simulation |
SimulationBatch | SimulationBatch |
SimulationBatchOptions | SimulationBatchOptions |
SimulationBatchRunValues | SimulationBatchRunValues |
SimulationPKAnalyses | SimulationPKAnalyses |
SimulationResults | SimulationResults |
simulationResultsToDataFrame | Converts a 'SimulationResults' objects to a data.frame |
SimulationRunOptions | SimulationRunOptions |
SimulationSettings | SimulationSettings |
SnapshotParameter | SnapshotParameter |
SolverSettings | SolverSettings |
Species | Default species defined in PK-Sim |
splitPopulationFile | Loads a population from the 'csvPopulationFile' and split the... |
StandardContainer | Standard containers typically available in a PBPK simulation |
StandardOntogeny | List of ontogeny supported in PK-Sim |
StandardPath | Standard parameter paths typically available in a PBPK... |
StandardPKParameter | Standard PK-Parameters types defined in OSPSuite This is only... |
toBaseUnit | Converts a value given in a specified unit into the base unit... |
toDisplayUnit | Convert base unit to display unit |
toPathArray | Convert a path defined as string to a path array |
toPathString | Convert a path array to a path as string with entries... |
toUnit | Converts a value given in base unit of a quantity into a... |
uniqueEntities | Extract Unique Elements of type 'Entity' |
updatePKParameter | Updates some properties of a PK-Parameter (displayName and... |
UserDefinedPKParameter | UserDefinedPKParameter |
validateDimension | Validate dimension |
validateUnit | Validate unit |
ValuePoint | ValuePoint |
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