Simulation | R Documentation |
An OSPSuite simulation
rSharp::NetObject
-> ospsuite::DotNetWrapper
-> ospsuite::ObjectBase
-> Simulation
root
Root container of the simulation (read-only)
path
Path of the root container of the simulation (read-only)
solver
SimulationSolver object for the simulation (read-only)
outputSchema
outputSchema object for the simulation (read-only)
outputSelections
outputSelections object for the simulation (read-only)
sourceFile
Path to the file the simulation was loaded from (read-only)
rSharp::NetObject$call()
rSharp::NetObject$finalize()
rSharp::NetObject$get()
rSharp::NetObject$getFields()
rSharp::NetObject$getMemberSignature()
rSharp::NetObject$getMethods()
rSharp::NetObject$getProperties()
rSharp::NetObject$getStaticFields()
rSharp::NetObject$getStaticMethods()
rSharp::NetObject$getStaticProperties()
rSharp::NetObject$set()
new()
Initialize a new instance of the class
Simulation$new(netObject, sourceFile = NULL)
netObject
Reference to NetObject
.NET simulation object
sourceFile
(Optional) File used to load the simulation
A new Simulation
object.
allEndogenousStationaryMoleculeNames()
Returns the name of all endogenous stationary molecules defined in the simulation. (e.g. with the flag IsStationary = TRUE) This is a typically a molecule that is individual specific such as en Enzyme, Protein, Transporter, FcRn etc.
Simulation$allEndogenousStationaryMoleculeNames()
allXenobioticFloatingMoleculeNames()
Returns the name of all xenobiotic floating molecules defined in the simulation. (e.g. with the flag IsStationary = FALSE) This is typically a molecule that is being explicitly simulated such as Compound, Inhibitor, DrugComplex.
Simulation$allXenobioticFloatingMoleculeNames()
allStationaryMoleculeNames()
Returns the name of all stationary molecules defined in the simulation. (e.g. with the flag IsStationary = TRUE)
Simulation$allStationaryMoleculeNames()
allFloatingMoleculeNames()
Returns the name of all floating molecules defined in the simulation. (e.g. with the flag IsStationary = FALSE)
Simulation$allFloatingMoleculeNames()
molWeightFor()
Returns the mol weight value (in core unit) associated to the quantity with given path or NA if not found
Simulation$molWeightFor(quantityPath)
quantityPath
Path of quantity used to retrieve the molecular weight
allApplicationsFor()
Returns the applications ordered by start time associated to the quantity with path quantityPath
or an empty list if not found
Simulation$allApplicationsFor(quantityPath)
quantityPath
Path of quantity used to retrieve the applications (e.g. applications resulting in this quantity being applied)
print()
Print the object to the console
Simulation$print(...)
...
Rest arguments.
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