coef.ZIPLNfit: Extract model coefficients

In PLN-team/PLNmodels: Poisson Lognormal Models

Extract model coefficients

Description

Extracts model coefficients from objects returned by ZIPLN() and its variants

Usage

## S3 method for class 'ZIPLNfit'
coef(object, type = c("count", "zero", "precision", "covariance"), ...)

Arguments

object	an R6 object with class ZIPLNfit
type	type of parameter that should be extracted. Either "count" (default) for B, "zero" for B0, "precision" for \Omega, "covariance" for \Sigma
...	additional parameters for S3 compatibility. Not used

Value

A matrix of coefficients extracted from the ZIPLNfit model.

See Also

sigma.ZIPLNfit()

Examples

data(scRNA)
# data subsample: only 100 random cell and the 50 most varying transcript
subset <- sample.int(nrow(scRNA), 100)
myPLN  <- ZIPLN(counts[, 1:50] ~ 1 + offset(log(total_counts)), subset = subset, data = scRNA)

PLN-team/PLNmodels documentation built on Oct. 13, 2024, 4:01 a.m.