API for PNNL-Comp-Mass-Spec/RomicsProcessor
omics-oriented package for reproducible and sharable data processing pipelines
| Global functions | |
|---|---|
| Example_processed_romics_object | Man page |
| Example_romics_data | Man page |
| Example_romics_metadata | Man page |
| distribBoxplot | Man page Source code |
| distribHistogram | Man page Source code |
| distribHistogramGlobal | Man page Source code |
| distribJitter | Man page Source code |
| distribRidges | Man page Source code |
| distribSina | Man page Source code |
| distribViolin | Man page Source code |
| extractMaxQuant | Man page Source code |
| extractMaxQuantIDs | Man page Source code |
| factorCountLevels | Man page Source code |
| featureSubset | Man page Source code |
| getTrend | Man page Source code |
| imputeMinDiv2 | Man page Source code |
| imputeMissing | Man page Source code |
| imputeMissingEval | Man page Source code |
| indPCA3D | Man page Source code |
| indPCAplot | Man page Source code |
| is.romics_object | Man page Source code |
| lmp | Man page |
| log10transform | Man page Source code |
| log2transform | Man page Source code |
| medianCenterSample | Man page Source code |
| medianNormFactor | Man page Source code |
| medianNormSample | Man page Source code |
| metadataRelations | Man page Source code |
| pFrequencyPlot | Man page Source code |
| romicsANOVA | Man page Source code |
| romicsAddDependency | Man page Source code |
| romicsApplyPipeline | Man page Source code |
| romicsBatchCorrection | Man page Source code |
| romicsCVs | Man page Source code |
| romicsCalculatedStats | Man page Source code |
| romicsChangeFactor | Man page Source code |
| romicsChangeIDs | Man page Source code |
| romicsCombineObjects | Man page Source code |
| romicsCorrelation | Man page Source code |
| romicsCreateDependencies | Man page Source code |
| romicsCreateObject | Man page Source code |
| romicsCreatePipeline | Man page Source code |
| romicsDeleteRowMissing | Man page Source code |
| romicsExportData | Man page Source code |
| romicsExtractFactor | Man page Source code |
| romicsFactorNames | Man page Source code |
| romicsFilterMissing | Man page Source code |
| romicsFilterVariable | Man page Source code |
| romicsGlmBinomial | Man page Source code |
| romicsHclust | Man page Source code |
| romicsHeatmap | Man page Source code |
| romicsLogCheck | Man page Source code |
| romicsMean | Man page Source code |
| romicsOutlierEval | Man page Source code |
| romicsOutlierRemove | Man page Source code |
| romicsPCA | Man page Source code |
| romicsPlotMissing | Man page Source code |
| romicsPmartR | Man page Source code |
| romicsRestoreMissing | Man page Source code |
| romicsSampleNameFromFactor | Man page Source code |
| romicsSd | Man page Source code |
| romicsSteps | Man page Source code |
| romicsSubset | Man page Source code |
| romicsTrend | Man page Source code |
| romicsTrendHeatmap | Man page Source code |
| romicsTtest | Man page Source code |
| romicsUmap | Man page Source code |
| romicsUmapPlot | Man page Source code |
| romicsUpdateColor | Man page Source code |
| romicsUpdateSteps | Man page Source code |
| romicsVariableHclust | Man page Source code |
| romicsVolcano | Man page Source code |
| romicsWilcoxTest | Man page Source code |
| romicsZeroToMissing | Man page Source code |
| romicsZscores | Man page Source code |
| singleVariablePlot | Man page Source code |
| singleVariableTrend | Man page Source code |
| theme_ROP | Man page Source code |
| unlog10data | Man page Source code |
| unlog2data | Man page Source code |
