clustorder: Order factors using hierarchical clustering

In PNorvaisas/PFun: Framework For HT Workflows

Description

Order factors using hierarchical clustering

Usage

clustorder(data, features, groups, value, dst.method = "euclidean",
  cl.method = "ward.D2", fill = 0, descending = TRUE, scalesel = "none")

Arguments

data	Data which will be used in clustering
features	Features to cluster (rows in heatmap)
groups	Groups for values which will be clustered (columns in heatmap)
value	Value which will be used for clustering
dst.method	Distance method for clustering, default: 'euclidean'
cl.method	Clustering method, default: 'ward.D2'
fill	Value used to fill NAs
descending	Reverse factor order?
scalesel	Scaling ("row","col","none"), default: "none"

Examples

clustorder(data,features,groups,value,dst.method='euclidean',cl.method='ward.D2',fill=0,descending=TRUE,scalesel='none')

PNorvaisas/PFun documentation built on May 20, 2019, 4:13 p.m.