PCAprep: Draw heatmap

In PNorvaisas/PFun: Framework For HT Workflows

Description

Draw heatmap

Usage

PCAprep(data, ID, feature, value, info, grouping = "All", scaling = TRUE,
  dmethod = "euclidean", cmethod = "ward.D2")

Arguments

data	Data used for heatmap
ID	Observations in columns
feature	feature in rows
value	Value to be used in heatmap
info	Table with descriptors of interest
grouping	Groups of observations for ellipses
dmethod	Distance measure for hierarchical clustering
cmethod	Clustering method for hierarchical clustering
scalink	Scale feature for hierarchical clustering?

Examples

PCAprep(data,ID,feature,value,info,cols=list(),scalesel='row',rnames=FALSE,reorder.rows=TRUE,reorder.columns=TRUE,name='Z-score',title="Heatmap",cdr="euclidean",cdc="euclidean",cmr="ward.D2",cmc="ward.D2",rmax=10)

PNorvaisas/PFun documentation built on May 20, 2019, 4:13 p.m.