plotDomainogram: Plot domainogram

In Pasquali-lab/UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Plot domainogram

Description

Plot domainogram

Usage

plotDomainogram(
  umi4c,
  dgram_function = "quotient",
  grouping = NULL,
  colors = NULL,
  xlim = NULL
)

Arguments

umi4c	UMI4C object as generated by makeUMI4C.
dgram_function	Function used for calculating the fold-change in the domainogram plot, either "difference" or "quotient". Default: "quotient".
grouping	Grouping used for the different samples. If none available or want to add new groupings, run addGrouping.
colors	Named vector of colors to use for plotting for each group.
xlim	Limits for the plot x axis (genomic coordinates).

Value

Produces the domainogram plot, summarizing the merged number of UMIs at the different scales analyzed (y axis).

Examples

data("ex_ciita_umi4c")
ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition")

plotDomainogram(ex_ciita_umi4c, grouping = "condition")

Pasquali-lab/UMI4Cats documentation built on Nov. 3, 2024, 3:10 p.m.