plotTrend: Plot adaptative smoothen trend

In Pasquali-lab/UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Plot adaptative smoothen trend

Description

Plot adaptative smoothen trend

Usage

plotTrend(umi4c, grouping = NULL, colors = NULL, xlim = NULL, ylim = NULL)

Arguments

umi4c	UMI4C object as generated by makeUMI4C.
grouping	Grouping used for the different samples. If none available or want to add new groupings, run addGrouping.
colors	Named vector of colors to use for plotting for each group.
xlim	Limits for the plot x axis (genomic coordinates).
ylim	Limits of the trend y axis.

Value

Produces the adaptative trend plot, showing average UMIs at each position taking into account the minimum number of molecules used to merge restriction fragments.

Examples

data("ex_ciita_umi4c")

plotTrend(ex_ciita_umi4c)

Pasquali-lab/UMI4Cats documentation built on Nov. 3, 2024, 3:10 p.m.