Files in PavlidisLab/ermineR
Gene set analysis with multifunctionality assessment
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/commonArguments.R
R/ermineR.R
R/findJava.R
R/import.R
R/miscFuns.R
R/ontology.R
R/readErmineJOutput.R
R/testWrappers.R
README.md
README.rmd
docs/LICENSE.html
docs/README.html
docs/authors.html
docs/ermineR.png
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GSRstats.html
docs/reference/annotation.html
docs/reference/corr.html
docs/reference/ermineR.html
docs/reference/expression.html
docs/reference/geneSetOpts.html
docs/reference/generalStats.html
docs/reference/getGoDates.html
docs/reference/getGoGenes.html
docs/reference/goAtDate.html
docs/reference/goToday.html
docs/reference/gsr.html
docs/reference/hitlist.html
docs/reference/index.html
docs/reference/iterations.html
docs/reference/makeAnnotation.html
docs/reference/ora.html
docs/reference/precRecall.html
docs/reference/readErmineJAnnot.html
docs/reference/readErmineJOutput.html
docs/reference/reexports.html
docs/reference/returnOpts.html
docs/reference/roc.html
docs/reference/scores.html
docs/reference/threshold.html
ermineR.Rproj
ermineR.png
inst/ermineJ-3.2/LICENSE.txt
inst/ermineJ-3.2/bin/ermineJ.bat
inst/ermineJ-3.2/bin/ermineJ.sh
inst/ermineJ-3.2/bin/forehead.conf
inst/ermineJ-3.2/lib/antlr.jar
inst/ermineJ-3.2/lib/baseCode.jar
inst/ermineJ-3.2/lib/colt.jar
inst/ermineJ-3.2/lib/commons-beanutils.jar
inst/ermineJ-3.2/lib/commons-cli.jar
inst/ermineJ-3.2/lib/commons-collections.jar
inst/ermineJ-3.2/lib/commons-configuration.jar
inst/ermineJ-3.2/lib/commons-io.jar
inst/ermineJ-3.2/lib/commons-lang3.jar
inst/ermineJ-3.2/lib/commons-logging.jar
inst/ermineJ-3.2/lib/commons-math3.jar
inst/ermineJ-3.2/lib/commons-net.jar
inst/ermineJ-3.2/lib/ermineJ.jar
inst/ermineJ-3.2/lib/forehead.jar
inst/ermineJ-3.2/lib/gemma-core.jar
inst/ermineJ-3.2/lib/gemma-gsec.jar
inst/ermineJ-3.2/lib/javax.activation-api.jar
inst/ermineJ-3.2/lib/jaxb-api.jar
inst/ermineJ-3.2/lib/jcl-over-slf4j.jar
inst/ermineJ-3.2/lib/jcommon.jar
inst/ermineJ-3.2/lib/jfreechart.jar
inst/ermineJ-3.2/lib/jsontools-core.jar
inst/ermineJ-3.2/lib/log4j.jar
inst/ermineJ-3.2/lib/mtj.jar
inst/ermineJ-3.2/lib/opencsv.jar
inst/ermineJ-3.2/lib/slf4j-api.jar
inst/ermineJ-3.2/lib/slf4j-log4j12.jar
inst/ermineJ-3.2/lib/xercesImpl.jar
inst/ermineJ-3.2/lib/xml-apis.jar
inst/ermineJ-3.2/readme-generic.html
inst/go-minimal.obo
man/GSRstats.Rd
man/annotation.Rd
man/corr.Rd
man/ermineR.Rd
man/expression.Rd
man/geneSetOpts.Rd
man/generalStats.Rd
man/getGoDates.Rd
man/getGoGenes.Rd
man/goAtDate.Rd
man/goToday.Rd
man/gsr.Rd
man/hitlist.Rd
man/iterations.Rd
man/listGemmaAnnotations.Rd
man/makeAnnotation.Rd
man/ora.Rd
man/precRecall.Rd
man/readErmineJAnnot.Rd
man/readErmineJOutput.Rd
man/reexports.Rd
man/returnOpts.Rd
man/roc.Rd
man/scores.Rd
man/threshold.Rd
tests/testthat.R
tests/testthat/testFiles/GPL96_noParents.an.txt.gz
tests/testthat/testFiles/chip
tests/testthat/testFiles/customGeneSet.tsv
tests/testthat/testFiles/europeanResults.tsv
tests/testthat/testFiles/expression
tests/testthat/testFiles/expression.tsv
tests/testthat/testFiles/go.obo
tests/testthat/testFiles/hitlist
tests/testthat/testFiles/makeTestFiles.R
tests/testthat/testFiles/pValues
tests/testthat/testFiles/pValuesBig
tests/testthat/testFiles/scoreFile.txt
tests/testthat/test_annotations.R
tests/testthat/test_ermineR.R
tests/testthat/test_java.R
tests/testthat/test_wrappers.R
