makeAnnotation: makeAnnotation

In PavlidisLab/ermineR: Gene set analysis with multifunctionality assessment

makeAnnotation

Description

Make an annotation object

Usage

makeAnnotation(
  annotationList,
  symbol = names(annotationList),
  name = NULL,
  output = NULL,
  return = TRUE
)

Arguments

annotationList	A list of go terms for each gene identifier. Gene identifiers are the names of the list, each element of the list should have character vectors with go terms in
symbol	Option gene symbols. If not provided IDs from annotation list will be used
name	Optional gene name
output	Output file name.
return	If results should be returned. Set to FALSE if you only want a file

PavlidisLab/ermineR documentation built on Sept. 12, 2022, 7:10 p.m.