make_barplot: Plot deconvolution results as a barplot

In PelzKo/immunedeconv2: Second generation methods for immune cell deconvolution

Plot deconvolution results as a barplot

Description

Plot deconvolution results as a barplot

Usage

make_barplot(result_list, title = "", file_name = NULL)

Arguments

result_list	A named list containing all deconvolution results
title	(optional) title of the plot
file_name	(optional) plot is saved in this file

Value

the ggplot object

Examples

data("single_cell_data_1")
data("cell_type_annotations_1")
data("batch_ids_1")
data("bulk")
data("RefData")

common_genes <- intersect(rownames(single_cell_data_1), rownames(bulk))[1:2000]

single_cell_data <- single_cell_data_1[common_genes, 1:500]
cell_type_annotations <- cell_type_annotations_1[1:500]
batch_ids <- batch_ids_1[1:500]
bulk <- bulk[common_genes, ]

deconvolution <- deconvolute(
  bulk, NULL, "bisque", single_cell_data,
  cell_type_annotations, batch_ids
)
deconvolution <- list(deconvolution)
names(deconvolution) <- "Bisque"
make_barplot(deconvolution)

PelzKo/immunedeconv2 documentation built on Feb. 12, 2025, 4:16 p.m.