save_as_h5ad: Save as .h5ad
In PelzKo/immunedeconv2: Second generation methods for immune cell deconvolution
View source: R/data_processing.R
save_as_h5ad R Documentation
Save as .h5ad
Description
Transform a single_cell_matrix into an anndata object and saves it
Usage
save_as_h5ad(single_cell_object, cell_type_annotations)
Arguments
single_cell_object
A matrix or dataframe with the single-cell data. Rows are genes,
columns are samples. Row and column names need to be set. Alternatively a SingleCellExperiment
or an AnnData object can be provided. In that case, note that cell-type labels need to be
indicated either directly providing a vector (cell_type_annotations) or by indicating the
column name that indicates the cell-type labels (cell_type_column_name). (Anndata: obs object,
SingleCellExperiment: colData object)
cell_type_annotations
A Vector of the cell type annotations. Has to be in the same order
as the samples in single_cell_object
Value
The path to the saved .h5ad file
PelzKo/immunedeconv2 documentation built on Feb. 12, 2025, 4:16 p.m.
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View source: R/data_processing.R
| save_as_h5ad | R Documentation |
Save as .h5ad
Description
Transform a single_cell_matrix into an anndata object and saves it
Usage
save_as_h5ad(single_cell_object, cell_type_annotations)
Arguments
single_cell_object |
A matrix or dataframe with the single-cell data. Rows are genes, columns are samples. Row and column names need to be set. Alternatively a SingleCellExperiment or an AnnData object can be provided. In that case, note that cell-type labels need to be indicated either directly providing a vector (cell_type_annotations) or by indicating the column name that indicates the cell-type labels (cell_type_column_name). (Anndata: obs object, SingleCellExperiment: colData object) |
cell_type_annotations |
A Vector of the cell type annotations. Has to be in the same order as the samples in single_cell_object |
Value
The path to the saved .h5ad file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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